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Cow genome map

           
Conread name:
           
Ss1.1-Mixc-0027f08.3
        

               
Conread position:
               
291-606
               

               
Cow position:
               
chr11:20205569-20205895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 187
               

               
Conread position:
               
315-558
               

               
Cow position:
               
chr11:19147879-19148129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
316-528
               

               
Cow position:
               
chr11:44614903-44615119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
319-714
               

               
Cow position:
               
chr11:70600570-70600976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
330-710
               

               
Cow position:
               
chr11:14649065-14649466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
332-719
               

               
Cow position:
               
chr11:62964737-62964327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
122, 62
               

               
Conread position:
               
334-532
               

               
Cow position:
               
chr11:15591233-15591434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
22, 142
               

               
Conread position:
               
334-715
               

               
Cow position:
               
chr11:76890278-76889892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 7
               

               
Conread position:
               
335-719
               

               
Cow position:
               
chr11:13592981-13592576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 61
               

               
Conread position:
               
336-576
               

               
Cow position:
               
chr11:17517640-17517388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
121, 89
               

               
Conread position:
               
337-648
               

               
Cow position:
               
chr11:69696705-69697016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
337-715
               

               
Cow position:
               
chr11:2084379-2083980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 30
               

               
Conread position:
               
338-710
               

               
Cow position:
               
chr11:27326983-27326610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
338-720
               

               
Cow position:
               
chr11:13500254-13499849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 90
               

               
Conread position:
               
341-574
               

               
Cow position:
               
chr11:49396290-49396534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
341-646
               

               
Cow position:
               
chr11:4052007-4052322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
341-699
               

               
Cow position:
               
chr11:48306146-48306484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
159, 23
               

               
Conread position:
               
341-703
               

               
Cow position:
               
chr11:30165745-30165365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
343-706
               

               
Cow position:
               
chr11:63998853-63999237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 370
               

               
Conread position:
               
343-708
               

               
Cow position:
               
chr11:32126850-32126461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
343-719
               

               
Cow position:
               
chr11:43524848-43524460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
343-720
               

               
Cow position:
               
chr11:48544670-48544275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
9, 56
               

               
Conread position:
               
343-720
               

               
Cow position:
               
chr11:52380640-52381035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
127, 22
               

               
Conread position:
               
344-572
               

               
Cow position:
               
chr11:36136342-36136104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
344-694
               

               
Cow position:
               
chr11:38334752-38334390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
133, 11
               

               
Conread position:
               
344-710
               

               
Cow position:
               
chr11:51293179-51293563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
344-719
               

               
Cow position:
               
chr11:24437984-24438385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
13, 164
               

               
Conread position:
               
345-529
               

               
Cow position:
               
chr11:44176821-44176639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
125, 30
               

               
Conread position:
               
346-527
               

               
Cow position:
               
chr11:53460928-53460742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
347-528
               

               
Cow position:
               
chr11:69035390-69035203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
350-576
               

               
Cow position:
               
chr11:21124381-21124617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
350-630
               

               
Cow position:
               
chr11:61675691-61675396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
350-673
               

               
Cow position:
               
chr11:8670246-8669891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
350-680
               

               
Cow position:
               
chr11:53510266-53510620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
350-709
               

               
Cow position:
               
chr11:44819307-44818949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
179, 14
               

               
Conread position:
               
350-719
               

               
Cow position:
               
chr11:59463411-59463797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
351-574
               

               
Cow position:
               
chr11:46884601-46884365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
351-715
               

               
Cow position:
               
chr11:18699095-18698721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 30
               

               
Conread position:
               
353-694
               

               
Cow position:
               
chr11:39462842-39462493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 15
               

               
Conread position:
               
354-567
               

               
Cow position:
               
chr11:17721578-17721803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
356-652
               

               
Cow position:
               
chr11:67911938-67912247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
14, 61
               

               
Conread position:
               
356-715
               

               
Cow position:
               
chr11:77546616-77546261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
357-528
               

               
Cow position:
               
chr11:42206637-42206466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
357-692
               

               
Cow position:
               
chr11:83398124-83397771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
120, 9
               

               
Conread position:
               
357-694
               

               
Cow position:
               
chr11:13863880-13864234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 284
               

               
Conread position:
               
357-698
               

               
Cow position:
               
chr11:40395659-40395298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 270
               

               
Conread position:
               
357-715
               

               
Cow position:
               
chr11:4436554-4436169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
358-657
               

               
Cow position:
               
chr11:53817073-53816759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
97, 12
               

               
Conread position:
               
358-714
               

               
Cow position:
               
chr11:45283149-45282772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
7, 290
               

               
Conread position:
               
359-566
               

               
Cow position:
               
chr11:58186090-58185882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
359-572
               

               
Cow position:
               
chr11:63478582-63478371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
359-694
               

               
Cow position:
               
chr11:23251382-23251728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 16
               

               
Conread position:
               
360-719
               

               
Cow position:
               
chr11:17508333-17508720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 153
               

               
Conread position:
               
361-719
               

               
Cow position:
               
chr11:5418045-5418423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 10
               

               
Conread position:
               
363-529
               

               
Cow position:
               
chr11:4621222-4621387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
363-562
               

               
Cow position:
               
chr11:4363702-4363908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
363-567
               

               
Cow position:
               
chr11:6319919-6320134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
363-719
               

               
Cow position:
               
chr11:44032221-44031842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
363-719
               

               
Cow position:
               
chr11:64103838-64104219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
364-713
               

               
Cow position:
               
chr11:62663029-62663375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
365-578
               

               
Cow position:
               
chr11:21830000-21830222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
365-641
               

               
Cow position:
               
chr11:5218953-5219233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
164, 202
               

               
Conread position:
               
365-641
               

               
Cow position:
               
chr11:72871108-72870817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
115, 32
               

               
Conread position:
               
365-719
               

               
Cow position:
               
chr11:20762064-20761686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
107, 349
               

               
Conread position:
               
366-612
               

               
Cow position:
               
chr11:77013982-77013731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
5, 106
               

               
Conread position:
               
366-640
               

               
Cow position:
               
chr11:63866449-63866737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 244
               

               
Conread position:
               
368-567
               

               
Cow position:
               
chr11:36361437-36361634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
368-572
               

               
Cow position:
               
chr11:42084465-42084682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
368-594
               

               
Cow position:
               
chr11:3797912-3797686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
161, 29
               

               
Conread position:
               
368-710
               

               
Cow position:
               
chr11:3920095-3920457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
102, 26
               

               
Conread position:
               
368-710
               

               
Cow position:
               
chr11:27913495-27913122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
368-715
               

               
Cow position:
               
chr11:45890150-45889800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
14, 98
               

               
Conread position:
               
368-715
               

               
Cow position:
               
chr11:65762376-65762756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
369-573
               

               
Cow position:
               
chr11:12555094-12555313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
370-520
               

               
Cow position:
               
chr11:13397304-13397455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 116
               

               
Conread position:
               
370-563
               

               
Cow position:
               
chr11:44620159-44619957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
370-574
               

               
Cow position:
               
chr11:57503685-57503474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 23
               

               
Conread position:
               
370-670
               

               
Cow position:
               
chr11:21508219-21507892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 308
               

               
Conread position:
               
371-506
               

               
Cow position:
               
chr11:80824106-80823976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
371-593
               

               
Cow position:
               
chr11:77227735-77227513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
371-617
               

               
Cow position:
               
chr11:29677412-29677153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
371-673
               

               
Cow position:
               
chr11:39060398-39060716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 233
               

               
Conread position:
               
371-714
               

               
Cow position:
               
chr11:77758553-77758913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
372-553
               

               
Cow position:
               
chr11:26057438-26057638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
373-667
               

               
Cow position:
               
chr11:26274760-26275066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
374-572
               

               
Cow position:
               
chr11:37099970-37100175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
374-600
               

               
Cow position:
               
chr11:10956669-10956905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 131
               

               
Conread position:
               
374-609
               

               
Cow position:
               
chr11:80639352-80639596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
156, 18
               

               
Conread position:
               
374-670
               

               
Cow position:
               
chr11:48086121-48085805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
90, 303
               

               
Conread position:
               
374-706
               

               
Cow position:
               
chr11:76653223-76652873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
374-715
               

               
Cow position:
               
chr11:45435282-45434930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
374-720
               

               
Cow position:
               
chr11:75479822-75480190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
375-520
               

               
Cow position:
               
chr11:24551592-24551441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
375-587
               

               
Cow position:
               
chr11:30894803-30895029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 19
               

               
Conread position:
               
375-703
               

               
Cow position:
               
chr11:5433470-5433121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 127
               

               
Conread position:
               
376-499
               

               
Cow position:
               
chr11:68870465-68870587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
376-517
               

               
Cow position:
               
chr11:60488484-60488334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
376-528
               

               
Cow position:
               
chr11:33271628-33271475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 18
               

               
Conread position:
               
376-529
               

               
Cow position:
               
chr11:21322305-21322451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
376-572
               

               
Cow position:
               
chr11:79666062-79666269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
98, 21
               

               
Conread position:
               
376-590
               

               
Cow position:
               
chr11:31537247-31537468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
113, 162
               

               
Conread position:
               
376-591
               

               
Cow position:
               
chr11:4382058-4382268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
376-611
               

               
Cow position:
               
chr11:4225286-4225050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
376-655
               

               
Cow position:
               
chr11:55911444-55911732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
25, 160
               

               
Conread position:
               
376-670
               

               
Cow position:
               
chr11:56288746-56288435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
78, 225
               

               
Conread position:
               
376-687
               

               
Cow position:
               
chr11:32353785-32354115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
76, 129
               

               
Conread position:
               
376-689
               

               
Cow position:
               
chr11:17278482-17278795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
376-689
               

               
Cow position:
               
chr11:62742447-62742764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 182
               

               
Conread position:
               
376-697
               

               
Cow position:
               
chr11:48660127-48659793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 16
               

               
Conread position:
               
376-697
               

               
Cow position:
               
chr11:70206517-70206184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 292
               

               
Conread position:
               
376-708
               

               
Cow position:
               
chr11:40794144-40794503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 249
               

               
Conread position:
               
376-708
               

               
Cow position:
               
chr11:77745045-77745407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
376-709
               

               
Cow position:
               
chr11:70756677-70756327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 197
               

               
Conread position:
               
376-710
               

               
Cow position:
               
chr11:54856810-54856481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
376-715
               

               
Cow position:
               
chr11:17889523-17889883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 277
               

               
Conread position:
               
376-715
               

               
Cow position:
               
chr11:48383730-48383370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
376-715
               

               
Cow position:
               
chr11:55053065-55052730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 56
               

               
Conread position:
               
376-718
               

               
Cow position:
               
chr11:76369329-76369680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
376-719
               

               
Cow position:
               
chr11:7874340-7873987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
376-719
               

               
Cow position:
               
chr11:15467647-15467309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 49
               

               
Conread position:
               
376-719
               

               
Cow position:
               
chr11:36194493-36194133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
376-719
               

               
Cow position:
               
chr11:47351534-47351185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
376-720
               

               
Cow position:
               
chr11:5961507-5961152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
376-720
               

               
Cow position:
               
chr11:78380868-78381215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 263
               

               
Conread position:
               
377-576
               

               
Cow position:
               
chr11:48297567-48297769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
377-580
               

               
Cow position:
               
chr11:25751067-25750867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
166, 20
               

               
Conread position:
               
377-649
               

               
Cow position:
               
chr11:2327888-2327596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
377-694
               

               
Cow position:
               
chr11:30721298-30720960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
377-703
               

               
Cow position:
               
chr11:19247004-19247342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
378-517
               

               
Cow position:
               
chr11:12528082-12528222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 50
               

               
Conread position:
               
378-658
               

               
Cow position:
               
chr11:50937560-50937848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
113, 19
               

               
Conread position:
               
379-517
               

               
Cow position:
               
chr11:18398951-18399079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
379-528
               

               
Cow position:
               
chr11:30857231-30857082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
379-579
               

               
Cow position:
               
chr11:45671186-45671382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
140, 16
               

               
Conread position:
               
379-588
               

               
Cow position:
               
chr11:66939393-66939618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
379-657
               

               
Cow position:
               
chr11:58594184-58594487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
379-689
               

               
Cow position:
               
chr11:29308782-29308451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 284
               

               
Conread position:
               
379-699
               

               
Cow position:
               
chr11:65826555-65826882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
379-702
               

               
Cow position:
               
chr11:70483654-70484004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
379-703
               

               
Cow position:
               
chr11:2917393-2917730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
379-703
               

               
Cow position:
               
chr11:63470053-63469733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
379-715
               

               
Cow position:
               
chr11:39115672-39115337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
379-719
               

               
Cow position:
               
chr11:19487277-19487638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 289
               

               
Conread position:
               
379-719
               

               
Cow position:
               
chr11:65058416-65058772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
380-560
               

               
Cow position:
               
chr11:63407891-63407701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
380-575
               

               
Cow position:
               
chr11:63165453-63165656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
380-590
               

               
Cow position:
               
chr11:3896501-3896727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
380-617
               

               
Cow position:
               
chr11:18447303-18447545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
380-715
               

               
Cow position:
               
chr11:53778818-53778458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
381-494
               

               
Cow position:
               
chr11:56749025-56749137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
381-501
               

               
Cow position:
               
chr11:28092647-28092521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
381-501
               

               
Cow position:
               
chr11:36180637-36180518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chr11:37565065-37564918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chr11:38223597-38223743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chr11:44016443-44016288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chr11:50629465-50629321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chr11:56115133-56114985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chr11:75915183-75915038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
381-573
               

               
Cow position:
               
chr11:18119698-18119494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
381-574
               

               
Cow position:
               
chr11:1980070-1980276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
381-589
               

               
Cow position:
               
chr11:70458240-70458014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 125
               

               
Conread position:
               
381-594
               

               
Cow position:
               
chr11:43736911-43737116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
146, 65
               

               
Conread position:
               
381-602
               

               
Cow position:
               
chr11:78820345-78820111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
75, 122
               

               
Conread position:
               
381-609
               

               
Cow position:
               
chr11:56311404-56311642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
381-611
               

               
Cow position:
               
chr11:25119737-25119979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 116
               

               
Conread position:
               
381-668
               

               
Cow position:
               
chr11:29659758-29659452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
381-679
               

               
Cow position:
               
chr11:5217264-5217587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
84, 125
               

               
Conread position:
               
381-679
               

               
Cow position:
               
chr11:63919869-63920170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
381-680
               

               
Cow position:
               
chr11:42067061-42066738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
13, 290
               

               
Conread position:
               
381-681
               

               
Cow position:
               
chr11:75285561-75285891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
381-684
               

               
Cow position:
               
chr11:81167836-81168158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
381-692
               

               
Cow position:
               
chr11:69978162-69977843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
381-694
               

               
Cow position:
               
chr11:68913340-68913006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 247
               

               
Conread position:
               
381-699
               

               
Cow position:
               
chr11:33824718-33825031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
138, 83
               

               
Conread position:
               
381-703
               

               
Cow position:
               
chr11:28367906-28367560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
381-703
               

               
Cow position:
               
chr11:67345465-67345793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
381-709
               

               
Cow position:
               
chr11:41133884-41134216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 142
               

               
Conread position:
               
381-709
               

               
Cow position:
               
chr11:71805970-71806294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
230, 83
               

               
Conread position:
               
381-709
               

               
Cow position:
               
chr11:74316902-74316562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
107, 321
               

               
Conread position:
               
381-710
               

               
Cow position:
               
chr11:42884589-42884929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
381-711
               

               
Cow position:
               
chr11:2788592-2788226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
381-711
               

               
Cow position:
               
chr11:9221527-9221876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
381-711
               

               
Cow position:
               
chr11:32254021-32254371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
381-714
               

               
Cow position:
               
chr11:23271810-23272155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
102, 63
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:2925112-2925444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
148, 61
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:8988031-8988384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 125
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:19591801-19592151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:33286759-33287109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
96, 286
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:42016442-42016792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:47899447-47899123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:48296221-48295876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
93, 56
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:63065849-63065500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:71390379-71390720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
141, 16
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr11:79728476-79728826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 77
               

               
Conread position:
               
381-716
               

               
Cow position:
               
chr11:23407654-23407302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
135, 13
               

               
Conread position:
               
381-718
               

               
Cow position:
               
chr11:35347555-35347914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
381-719
               

               
Cow position:
               
chr11:31413652-31413292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
381-719
               

               
Cow position:
               
chr11:46329694-46329340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
381-719
               

               
Cow position:
               
chr11:46747666-46748026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
381-719
               

               
Cow position:
               
chr11:63435714-63435357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
381-720
               

               
Cow position:
               
chr11:25791495-25791853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 280
               

               
Conread position:
               
381-720
               

               
Cow position:
               
chr11:37975117-37974763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 58
               

               
Conread position:
               
382-520
               

               
Cow position:
               
chr11:30986831-30986691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
382-528
               

               
Cow position:
               
chr11:3267473-3267611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
382-528
               

               
Cow position:
               
chr11:6784398-6784253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
382-528
               

               
Cow position:
               
chr11:41278381-41278230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
382-528
               

               
Cow position:
               
chr11:63484136-63483987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
382-566
               

               
Cow position:
               
chr11:80370310-80370114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
382-566
               

               
Cow position:
               
chr11:81065856-81066050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
382-574
               

               
Cow position:
               
chr11:87171881-87172085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
382-575
               

               
Cow position:
               
chr11:18915205-18915017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
382-578
               

               
Cow position:
               
chr11:15369583-15369373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
382-664
               

               
Cow position:
               
chr11:8584510-8584214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
146, 89
               

               
Conread position:
               
382-689
               

               
Cow position:
               
chr11:31866776-31866468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
382-689
               

               
Cow position:
               
chr11:85191425-85191751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 12
               

               
Conread position:
               
382-695
               

               
Cow position:
               
chr11:35980946-35981281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
382-699
               

               
Cow position:
               
chr11:26117542-26117860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
382-699
               

               
Cow position:
               
chr11:32777868-32777550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
382-703
               

               
Cow position:
               
chr11:34646789-34646447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
382-714
               

               
Cow position:
               
chr11:84228528-84228869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
382-715
               

               
Cow position:
               
chr11:19500609-19500936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
112, 88
               

               
Conread position:
               
382-715
               

               
Cow position:
               
chr11:52297028-52297377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
82, 324
               

               
Conread position:
               
382-715
               

               
Cow position:
               
chr11:64029073-64029414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
382-715
               

               
Cow position:
               
chr11:84385443-84385794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
383-505
               

               
Cow position:
               
chr11:31508098-31507976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
383-527
               

               
Cow position:
               
chr11:81175794-81175643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
383-537
               

               
Cow position:
               
chr11:8421931-8422084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
146, 91
               

               
Conread position:
               
383-558
               

               
Cow position:
               
chr11:5176187-5176369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
383-567
               

               
Cow position:
               
chr11:30322300-30322494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 63
               

               
Conread position:
               
383-574
               

               
Cow position:
               
chr11:86895566-86895368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
383-591
               

               
Cow position:
               
chr11:55398957-55399177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
383-624
               

               
Cow position:
               
chr11:3715018-3714763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 202
               

               
Conread position:
               
383-648
               

               
Cow position:
               
chr11:22676306-22676025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
383-653
               

               
Cow position:
               
chr11:62812758-62813045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
383-683
               

               
Cow position:
               
chr11:62789321-62789003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
383-689
               

               
Cow position:
               
chr11:50472511-50472184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
383-698
               

               
Cow position:
               
chr11:67615059-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 10
               

               
Conread position:
               
383-711
               

               
Cow position:
               
chr11:63433872-63434208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
120, 74
               

               
Conread position:
               
383-719
               

               
Cow position:
               
chr11:51687543-51687886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
106, 14
               

               
Conread position:
               
383-720
               

               
Cow position:
               
chr11:32054992-32055346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 11
               

               
Conread position:
               
384-671
               

               
Cow position:
               
chr11:31875286-31874979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
384-679
               

               
Cow position:
               
chr11:47310791-47311106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
73, 122
               

               
Conread position:
               
384-703
               

               
Cow position:
               
chr11:38639292-38638975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 127
               

               
Conread position:
               
384-703
               

               
Cow position:
               
chr11:68112066-68112407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
75, 125
               

               
Conread position:
               
384-714
               

               
Cow position:
               
chr11:40466929-40467276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
8, 116
               

               
Conread position:
               
384-715
               

               
Cow position:
               
chr11:8544824-8545169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
384-715
               

               
Cow position:
               
chr11:26535978-26535622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
24, 333
               

               
Conread position:
               
384-715
               

               
Cow position:
               
chr11:30830430-30830772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
145, 42
               

               
Conread position:
               
386-628
               

               
Cow position:
               
chr11:57608275-57608527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
71, 58
               

               
Conread position:
               
386-694
               

               
Cow position:
               
chr11:27907961-27907657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 165
               

               
Conread position:
               
386-710
               

               
Cow position:
               
chr11:866472-866151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
13, 127
               

               
Conread position:
               
386-714
               

               
Cow position:
               
chr11:31417614-31417277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
85, 229
               

               
Conread position:
               
386-715
               

               
Cow position:
               
chr11:41215924-41215585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
386-715
               

               
Cow position:
               
chr11:48932398-48932741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 161
               

               
Conread position:
               
387-567
               

               
Cow position:
               
chr11:63498940-63499128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
387-632
               

               
Cow position:
               
chr11:51195906-51196153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
387-715
               

               
Cow position:
               
chr11:21728099-21728425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
135, 30
               

               
Conread position:
               
387-715
               

               
Cow position:
               
chr11:30209633-30209977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
85, 41
               

               
Conread position:
               
387-715
               

               
Cow position:
               
chr11:50152622-50152972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
13, 325
               

               
Conread position:
               
387-719
               

               
Cow position:
               
chr11:17859963-17860315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
388-518
               

               
Cow position:
               
chr11:43594239-43594374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
388-528
               

               
Cow position:
               
chr11:2830844-2830701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
388-680
               

               
Cow position:
               
chr11:19891025-19890742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
388-690
               

               
Cow position:
               
chr11:69973507-69973811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 201
               

               
Conread position:
               
388-715
               

               
Cow position:
               
chr11:6245509-6245165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
389-528
               

               
Cow position:
               
chr11:30172486-30172349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
389-574
               

               
Cow position:
               
chr11:15366790-15366981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
140, 78
               

               
Conread position:
               
389-695
               

               
Cow position:
               
chr11:7924417-7924719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
389-711
               

               
Cow position:
               
chr11:6399877-6400223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
65, 8
               

               
Conread position:
               
389-715
               

               
Cow position:
               
chr11:1485673-1486024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
389-715
               

               
Cow position:
               
chr11:10095530-10095190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
389-720
               

               
Cow position:
               
chr11:33414414-33414073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
390-528
               

               
Cow position:
               
chr11:26823299-26823154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
390-528
               

               
Cow position:
               
chr11:51683403-51683260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
390-572
               

               
Cow position:
               
chr11:75749652-75749472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
122, 38
               

               
Conread position:
               
390-574
               

               
Cow position:
               
chr11:47412029-47411833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 186
               

               
Conread position:
               
390-710
               

               
Cow position:
               
chr11:57724636-57724977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
390-710
               

               
Cow position:
               
chr11:59862397-59862061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 251
               

               
Conread position:
               
390-715
               

               
Cow position:
               
chr11:1380864-1380525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
78, 266
               

               
Conread position:
               
390-715
               

               
Cow position:
               
chr11:63519180-63518853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
390-715
               

               
Cow position:
               
chr11:81300434-81300766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
100, 81
               

               
Conread position:
               
390-719
               

               
Cow position:
               
chr11:5486203-5485849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
37, 117
               

               
Conread position:
               
390-720
               

               
Cow position:
               
chr11:38236432-38236082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
139, 80
               

               
Conread position:
               
391-520
               

               
Cow position:
               
chr11:18574668-18574803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
391-528
               

               
Cow position:
               
chr11:23220546-23220407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
391-528
               

               
Cow position:
               
chr11:25968667-25968810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
391-528
               

               
Cow position:
               
chr11:32800813-32800670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
391-528
               

               
Cow position:
               
chr11:41213238-41213094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
391-528
               

               
Cow position:
               
chr11:62102260-62102403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
391-528
               

               
Cow position:
               
chr11:76896187-76896330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
391-529
               

               
Cow position:
               
chr11:63849764-63849908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
391-552
               

               
Cow position:
               
chr11:35732897-35733070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
391-572
               

               
Cow position:
               
chr11:7571806-7571618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
391-572
               

               
Cow position:
               
chr11:39250149-39249966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 7
               

               
Conread position:
               
391-574
               

               
Cow position:
               
chr11:6094218-6094411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
391-574
               

               
Cow position:
               
chr11:34968427-34968622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
80, 115
               

               
Conread position:
               
391-574
               

               
Cow position:
               
chr11:45350324-45350520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
391-574
               

               
Cow position:
               
chr11:64781274-64781078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
391-576
               

               
Cow position:
               
chr11:28078675-28078493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
391-576
               

               
Cow position:
               
chr11:77017416-77017231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
138, 102
               

               
Conread position:
               
391-589
               

               
Cow position:
               
chr11:62811482-62811270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 130
               

               
Conread position:
               
391-590
               

               
Cow position:
               
chr11:69417589-69417375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
391-647
               

               
Cow position:
               
chr11:1067253-1067532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
391-647
               

               
Cow position:
               
chr11:69168774-69168493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
391-648
               

               
Cow position:
               
chr11:35536761-35536497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
391-652
               

               
Cow position:
               
chr11:3908428-3908706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
391-661
               

               
Cow position:
               
chr11:16315060-16314769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 115
               

               
Conread position:
               
391-681
               

               
Cow position:
               
chr11:7330007-7329701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
391-683
               

               
Cow position:
               
chr11:83032863-83032558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 281
               

               
Conread position:
               
391-692
               

               
Cow position:
               
chr11:18425053-18425372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
66, 299
               

               
Conread position:
               
391-694
               

               
Cow position:
               
chr11:57873994-57873693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
73, 132
               

               
Conread position:
               
391-694
               

               
Cow position:
               
chr11:59024167-59024491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 202
               

               
Conread position:
               
391-703
               

               
Cow position:
               
chr11:48650172-48649837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 250
               

               
Conread position:
               
391-705
               

               
Cow position:
               
chr11:7460444-7460766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
391-708
               

               
Cow position:
               
chr11:36940408-36940750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
79, 249
               

               
Conread position:
               
391-709
               

               
Cow position:
               
chr11:33349516-33349849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 19
               

               
Conread position:
               
391-709
               

               
Cow position:
               
chr11:55972745-55973066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
391-709
               

               
Cow position:
               
chr11:56729121-56728799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 103
               

               
Conread position:
               
391-709
               

               
Cow position:
               
chr11:83357582-83357243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
80, 168
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr11:171529-171849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 145
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr11:3720441-3720103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr11:5075044-5075374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
64, 262
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr11:9464023-9463680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr11:20684384-20684728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr11:31526066-31525715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr11:32595645-32595318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 222
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr11:70951053-70950731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr11:81143358-81143702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
66, 88
               

               
Conread position:
               
391-711
               

               
Cow position:
               
chr11:67931305-67931646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
66, 156
               

               
Conread position:
               
391-714
               

               
Cow position:
               
chr11:3726476-3726130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
391-714
               

               
Cow position:
               
chr11:15504295-15503948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:21893963-21894310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
66, 266
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:26143913-26144255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:27747104-27746768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:30476181-30475846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:37804366-37804711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 287
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:42359279-42358963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
185, 35
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:45619536-45619193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 111
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:66041458-66041115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:70382503-70382849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 182
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:80756604-80756940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
137, 70
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr11:81138398-81138067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
80, 197
               

               
Conread position:
               
391-720
               

               
Cow position:
               
chr11:68909668-68910012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
392-515
               

               
Cow position:
               
chr11:66685725-66685847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
392-516
               

               
Cow position:
               
chr11:73638039-73637910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
77, 5
               

               
Conread position:
               
392-517
               

               
Cow position:
               
chr11:75388192-75388317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
392-520
               

               
Cow position:
               
chr11:6638818-6638945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
392-528
               

               
Cow position:
               
chr11:32586941-32587079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
392-532
               

               
Cow position:
               
chr11:63475487-63475632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
392-578
               

               
Cow position:
               
chr11:63382012-63382205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
130, 83
               

               
Conread position:
               
392-607
               

               
Cow position:
               
chr11:43914478-43914249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 216
               

               
Conread position:
               
392-661
               

               
Cow position:
               
chr11:35669781-35670041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
392-715
               

               
Cow position:
               
chr11:258989-259329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
25, 5
               

               
Conread position:
               
392-715
               

               
Cow position:
               
chr11:17661248-17660938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
231, 36
               

               
Conread position:
               
392-715
               

               
Cow position:
               
chr11:18508848-18509175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
392-715
               

               
Cow position:
               
chr11:30192363-30192016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
392-719
               

               
Cow position:
               
chr11:42291655-42291993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 251
               

               
Conread position:
               
392-720
               

               
Cow position:
               
chr11:64048576-64048257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
392-720
               

               
Cow position:
               
chr11:82107734-82108053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
393-528
               

               
Cow position:
               
chr11:17369710-17369575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
393-528
               

               
Cow position:
               
chr11:38656998-38657139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
393-528
               

               
Cow position:
               
chr11:68570197-68570336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 49
               

               
Conread position:
               
393-700
               

               
Cow position:
               
chr11:15772529-15772856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 316
               

               
Conread position:
               
393-702
               

               
Cow position:
               
chr11:64009909-64009575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
393-715
               

               
Cow position:
               
chr11:62620560-62620227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 252
               

               
Conread position:
               
393-719
               

               
Cow position:
               
chr11:30708689-30708338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
393-720
               

               
Cow position:
               
chr11:55494848-55494519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
180, 39
               

               
Conread position:
               
394-511
               

               
Cow position:
               
chr11:31525473-31525590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
394-524
               

               
Cow position:
               
chr11:68592202-68592066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
394-528
               

               
Cow position:
               
chr11:35848959-35849093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
394-528
               

               
Cow position:
               
chr11:43641571-43641431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
394-558
               

               
Cow position:
               
chr11:77241885-77241713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 165
               

               
Conread position:
               
394-563
               

               
Cow position:
               
chr11:40538732-40538553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
394-566
               

               
Cow position:
               
chr11:36092736-36092917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
394-566
               

               
Cow position:
               
chr11:79548750-79548938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
394-571
               

               
Cow position:
               
chr11:17074045-17074224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 102
               

               
Conread position:
               
394-571
               

               
Cow position:
               
chr11:71854099-71854284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
394-572
               

               
Cow position:
               
chr11:36300401-36300584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
394-572
               

               
Cow position:
               
chr11:46784646-46784468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
133, 77
               

               
Conread position:
               
394-576
               

               
Cow position:
               
chr11:10563188-10562998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
93, 106
               

               
Conread position:
               
394-576
               

               
Cow position:
               
chr11:19578839-19579026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
394-576
               

               
Cow position:
               
chr11:41576690-41576878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
394-582
               

               
Cow position:
               
chr11:32260714-32260514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
394-583
               

               
Cow position:
               
chr11:47784963-47784757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
394-590
               

               
Cow position:
               
chr11:37435803-37436015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 38
               

               
Conread position:
               
394-609
               

               
Cow position:
               
chr11:41438002-41438233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 219
               

               
Conread position:
               
394-626
               

               
Cow position:
               
chr11:35351850-35352100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
60, 232
               

               
Conread position:
               
394-634
               

               
Cow position:
               
chr11:4636992-4637250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
394-654
               

               
Cow position:
               
chr11:17676192-17676467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 209
               

               
Conread position:
               
394-656
               

               
Cow position:
               
chr11:7331227-7330952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 13
               

               
Conread position:
               
394-660
               

               
Cow position:
               
chr11:80412826-80413114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
78, 182
               

               
Conread position:
               
394-665
               

               
Cow position:
               
chr11:30211068-30210799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
198, 32
               

               
Conread position:
               
394-674
               

               
Cow position:
               
chr11:7378765-7378476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
131, 64
               

               
Conread position:
               
394-677
               

               
Cow position:
               
chr11:375642-375335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
394-681
               

               
Cow position:
               
chr11:7385617-7385306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
135, 112
               

               
Conread position:
               
394-681
               

               
Cow position:
               
chr11:64105176-64104870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 85
               

               
Conread position:
               
394-683
               

               
Cow position:
               
chr11:13940370-13940066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
56, 189
               

               
Conread position:
               
394-684
               

               
Cow position:
               
chr11:27719156-27719449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
394-685
               

               
Cow position:
               
chr11:11994529-11994832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
63, 251
               

               
Conread position:
               
394-687
               

               
Cow position:
               
chr11:49872704-49873017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
394-689
               

               
Cow position:
               
chr11:67614742-67615060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
394-693
               

               
Cow position:
               
chr11:45276965-45277281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 192
               

               
Conread position:
               
394-694
               

               
Cow position:
               
chr11:48672897-48672578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
76, 302
               

               
Conread position:
               
394-697
               

               
Cow position:
               
chr11:52690342-52690661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
394-697
               

               
Cow position:
               
chr11:72443297-72442974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
70, 112
               

               
Conread position:
               
394-699
               

               
Cow position:
               
chr11:16541018-16540722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
180, 64
               

               
Conread position:
               
394-699
               

               
Cow position:
               
chr11:55744652-55744335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 219
               

               
Conread position:
               
394-702
               

               
Cow position:
               
chr11:21421755-21422079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
394-703
               

               
Cow position:
               
chr11:4732527-4732195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
394-703
               

               
Cow position:
               
chr11:49057566-49057258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
173, 78
               

               
Conread position:
               
394-707
               

               
Cow position:
               
chr11:40459288-40458966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
394-708
               

               
Cow position:
               
chr11:48429301-48428957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
394-709
               

               
Cow position:
               
chr11:6233695-6234030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 307
               

               
Conread position:
               
394-709
               

               
Cow position:
               
chr11:8496216-8495889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
77, 120
               

               
Conread position:
               
394-709
               

               
Cow position:
               
chr11:17227467-17227796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
7, 82
               

               
Conread position:
               
394-709
               

               
Cow position:
               
chr11:66188138-66188471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
394-710
               

               
Cow position:
               
chr11:19594002-19593670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 179
               

               
Conread position:
               
394-710
               

               
Cow position:
               
chr11:64335013-64334706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
394-710
               

               
Cow position:
               
chr11:66572309-66572653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
394-710
               

               
Cow position:
               
chr11:74380373-74380043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
73, 5
               

               
Conread position:
               
394-711
               

               
Cow position:
               
chr11:6202639-6202294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
63, 241
               

               
Conread position:
               
394-711
               

               
Cow position:
               
chr11:9270555-9270880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
394-711
               

               
Cow position:
               
chr11:11125848-11125510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
394-711
               

               
Cow position:
               
chr11:18572966-18572649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
394-714
               

               
Cow position:
               
chr11:20238859-20238516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 319
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:27248671-27248336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 304
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:33348016-33348342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 42
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:35580444-35580101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 191
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:36182874-36182530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:64044400-64044085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
165, 90
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:65157222-65157568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 320
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:68904905-68905230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
137, 65
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:72375483-72375842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
63, 332
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:75874589-75874908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
178, 89
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr11:85723877-85723543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
394-716
               

               
Cow position:
               
chr11:38794695-38794392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
97, 62
               

               
Conread position:
               
394-717
               

               
Cow position:
               
chr11:62573845-62574164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 102
               

               
Conread position:
               
394-719
               

               
Cow position:
               
chr11:35724153-35723819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
65, 112
               

               
Conread position:
               
394-719
               

               
Cow position:
               
chr11:35882074-35881750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
188, 66
               

               
Conread position:
               
394-719
               

               
Cow position:
               
chr11:41985865-41986205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 219
               

               
Conread position:
               
394-720
               

               
Cow position:
               
chr11:49149229-49148875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 264
               

               
Conread position:
               
394-720
               

               
Cow position:
               
chr11:67600961-67600619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 83
               

               
Conread position:
               
395-568
               

               
Cow position:
               
chr11:1485052-1485229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
95, 70
               

               
Conread position:
               
395-694
               

               
Cow position:
               
chr11:7320349-7320045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
185, 275
               

               
Conread position:
               
396-532
               

               
Cow position:
               
chr11:65939681-65939822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
396-551
               

               
Cow position:
               
chr11:33369333-33369165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
396-572
               

               
Cow position:
               
chr11:9699074-9699251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
133, 67
               

               
Conread position:
               
396-584
               

               
Cow position:
               
chr11:9836274-9836473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 185
               

               
Conread position:
               
396-640
               

               
Cow position:
               
chr11:62889711-62889974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 253
               

               
Conread position:
               
396-685
               

               
Cow position:
               
chr11:47837500-47837186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
397-528
               

               
Cow position:
               
chr11:57767369-57767234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
397-590
               

               
Cow position:
               
chr11:29786313-29786527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
397-678
               

               
Cow position:
               
chr11:249325-249605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
176, 51
               

               
Conread position:
               
397-681
               

               
Cow position:
               
chr11:21136974-21136688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
170, 62
               

               
Conread position:
               
397-703
               

               
Cow position:
               
chr11:8524938-8525255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
78, 91
               

               
Conread position:
               
397-710
               

               
Cow position:
               
chr11:4323546-4323204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
397-710
               

               
Cow position:
               
chr11:36058978-36058653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 225
               

               
Conread position:
               
397-714
               

               
Cow position:
               
chr11:4207491-4207157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
397-715
               

               
Cow position:
               
chr11:58588508-58588191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
397-715
               

               
Cow position:
               
chr11:62239921-62239590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
398-517
               

               
Cow position:
               
chr11:66104214-66104333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
398-532
               

               
Cow position:
               
chr11:2937493-2937623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
398-567
               

               
Cow position:
               
chr11:63485111-63484936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
128, 66
               

               
Conread position:
               
398-646
               

               
Cow position:
               
chr11:41313483-41313745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
118, 34
               

               
Conread position:
               
398-651
               

               
Cow position:
               
chr11:4199453-4199179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
74, 161
               

               
Conread position:
               
398-665
               

               
Cow position:
               
chr11:6194567-6194300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
116, 62
               

               
Conread position:
               
398-665
               

               
Cow position:
               
chr11:46999165-46998877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
59, 223
               

               
Conread position:
               
398-676
               

               
Cow position:
               
chr11:31228132-31227850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 19
               

               
Conread position:
               
398-693
               

               
Cow position:
               
chr11:70978556-70978862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
398-699
               

               
Cow position:
               
chr11:61349030-61348747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
398-711
               

               
Cow position:
               
chr11:36647506-36647211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
398-711
               

               
Cow position:
               
chr11:83043188-83043516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
121, 307
               

               
Conread position:
               
398-714
               

               
Cow position:
               
chr11:27404892-27405221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 283
               

               
Conread position:
               
398-714
               

               
Cow position:
               
chr11:42083632-42083322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr11:18484022-18484321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
169, 65
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr11:21843960-21844289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 176
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr11:22931818-22932131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
177, 62
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr11:25620211-25620553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
56, 273
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr11:49153119-49152795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 60
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr11:65495165-65495490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
131, 189
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr11:71492685-71493014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr11:80923147-80923480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
398-719
               

               
Cow position:
               
chr11:30638773-30639106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 224
               

               
Conread position:
               
398-720
               

               
Cow position:
               
chr11:51729453-51729127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 59
               

               
Conread position:
               
399-517
               

               
Cow position:
               
chr11:1842135-1842019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
399-689
               

               
Cow position:
               
chr11:40608415-40608729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
399-699
               

               
Cow position:
               
chr11:21852138-21852444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
102, 61
               

               
Conread position:
               
399-714
               

               
Cow position:
               
chr11:45631602-45631917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
120, 56
               

               
Conread position:
               
399-714
               

               
Cow position:
               
chr11:70304253-70303925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
73, 212
               

               
Conread position:
               
399-715
               

               
Cow position:
               
chr11:65607513-65607847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 226
               

               
Conread position:
               
400-690
               

               
Cow position:
               
chr11:55762033-55761738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
130, 7
               

               
Conread position:
               
400-694
               

               
Cow position:
               
chr11:17036355-17036667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
400-694
               

               
Cow position:
               
chr11:43360610-43360919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
80, 177
               

               
Conread position:
               
400-714
               

               
Cow position:
               
chr11:86925787-86926083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
57, 12
               

               
Conread position:
               
400-715
               

               
Cow position:
               
chr11:14470538-14470213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
112, 171
               

               
Conread position:
               
400-715
               

               
Cow position:
               
chr11:81405990-81406315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 91
               

               
Conread position:
               
401-573
               

               
Cow position:
               
chr11:18543345-18543513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
128, 46
               

               
Conread position:
               
402-567
               

               
Cow position:
               
chr11:60720279-60720457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
402-573
               

               
Cow position:
               
chr11:80586441-80586267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
403-590
               

               
Cow position:
               
chr11:35109366-35109566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
403-710
               

               
Cow position:
               
chr11:41549163-41549487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
403-711
               

               
Cow position:
               
chr11:24602132-24601821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
404-574
               

               
Cow position:
               
chr11:49207884-49207702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 151
               

               
Conread position:
               
404-715
               

               
Cow position:
               
chr11:77750588-77750928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
64, 112
               

               
Conread position:
               
405-561
               

               
Cow position:
               
chr11:26343274-26343106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
405-571
               

               
Cow position:
               
chr11:58102586-58102766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
405-590
               

               
Cow position:
               
chr11:21173265-21173462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
405-641
               

               
Cow position:
               
chr11:84890556-84890804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 52
               

               
Conread position:
               
405-661
               

               
Cow position:
               
chr11:17083141-17083414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
405-688
               

               
Cow position:
               
chr11:77705922-77705625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
64, 168
               

               
Conread position:
               
405-694
               

               
Cow position:
               
chr11:43008134-43008442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 152
               

               
Conread position:
               
405-699
               

               
Cow position:
               
chr11:86132296-86132594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
405-709
               

               
Cow position:
               
chr11:13042976-13043296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 271
               

               
Conread position:
               
405-715
               

               
Cow position:
               
chr11:48474881-48474546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
406-568
               

               
Cow position:
               
chr11:2836031-2835856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
406-568
               

               
Cow position:
               
chr11:64022939-64023102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
68, 85
               

               
Conread position:
               
406-659
               

               
Cow position:
               
chr11:34467733-34467485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
123, 171
               

               
Conread position:
               
406-685
               

               
Cow position:
               
chr11:8462176-8461888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 202
               

               
Conread position:
               
406-703
               

               
Cow position:
               
chr11:47755209-47755529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
51, 175
               

               
Conread position:
               
406-708
               

               
Cow position:
               
chr11:53463113-53462793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 220
               

               
Conread position:
               
406-709
               

               
Cow position:
               
chr11:31337550-31337230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 55
               

               
Conread position:
               
406-710
               

               
Cow position:
               
chr11:18656393-18656082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 186
               

               
Conread position:
               
406-711
               

               
Cow position:
               
chr11:28993577-28993884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
406-711
               

               
Cow position:
               
chr11:77319583-77319260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 301
               

               
Conread position:
               
406-715
               

               
Cow position:
               
chr11:30934563-30934267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
174, 38
               

               
Conread position:
               
406-715
               

               
Cow position:
               
chr11:42296456-42296774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
406-715
               

               
Cow position:
               
chr11:60301806-60302115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
170, 38
               

               
Conread position:
               
406-715
               

               
Cow position:
               
chr11:71009278-71008979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
166, 54
               

               
Conread position:
               
406-715
               

               
Cow position:
               
chr11:73353896-73354211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
124, 71
               

               
Conread position:
               
406-719
               

               
Cow position:
               
chr11:45872139-45872480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
406-720
               

               
Cow position:
               
chr11:81913552-81913883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
65, 107
               

               
Conread position:
               
407-515
               

               
Cow position:
               
chr11:82732984-82733092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
407-528
               

               
Cow position:
               
chr11:899606-899478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
407-644
               

               
Cow position:
               
chr11:27565486-27565249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
123, 24
               

               
Conread position:
               
407-711
               

               
Cow position:
               
chr11:18852073-18851766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
122, 194
               

               
Conread position:
               
407-715
               

               
Cow position:
               
chr11:32693313-32693628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
16, 104
               

               
Conread position:
               
408-609
               

               
Cow position:
               
chr11:39854853-39855064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
121, 164
               

               
Conread position:
               
408-703
               

               
Cow position:
               
chr11:85703858-85703561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 69
               

               
Conread position:
               
408-719
               

               
Cow position:
               
chr11:34144750-34145074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 150
               

               
Conread position:
               
409-586
               

               
Cow position:
               
chr11:64409134-64408952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
120, 151
               

               
Conread position:
               
410-572
               

               
Cow position:
               
chr11:79707870-79707707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
410-715
               

               
Cow position:
               
chr11:64905145-64904840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
410-715
               

               
Cow position:
               
chr11:83066659-83066338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
44, 208
               

               
Conread position:
               
411-665
               

               
Cow position:
               
chr11:8683912-8684179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 177
               

               
Conread position:
               
413-693
               

               
Cow position:
               
chr11:35791656-35791948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
414-719
               

               
Cow position:
               
chr11:18243781-18244099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
415-694
               

               
Cow position:
               
chr11:63202085-63202383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
56, 236
               

               
Conread position:
               
416-717
               

               
Cow position:
               
chr11:10992423-10992123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
166, 126
               

               
Conread position:
               
416-719
               

               
Cow position:
               
chr11:38670851-38670522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 176
               

               
Conread position:
               
417-655
               

               
Cow position:
               
chr11:30370262-30370010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 180
               

               
Conread position:
               
417-715
               

               
Cow position:
               
chr11:39499515-39499202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
50, 246
               

               
Conread position:
               
421-715
               

               
Cow position:
               
chr11:38071500-38071200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
421-719
               

               
Cow position:
               
chr11:61203322-61203005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
422-710
               

               
Cow position:
               
chr11:17493638-17493327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
422-715
               

               
Cow position:
               
chr11:87155676-87155361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
423-574
               

               
Cow position:
               
chr11:58927727-58927575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
98, 84
               

               
Conread position:
               
424-605
               

               
Cow position:
               
chr11:34136394-34136201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 172
               

               
Conread position:
               
424-703
               

               
Cow position:
               
chr11:11469500-11469779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
424-715
               

               
Cow position:
               
chr11:45646440-45646751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 282
               

               
Conread position:
               
425-708
               

               
Cow position:
               
chr11:49934591-49934887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
428-715
               

               
Cow position:
               
chr11:65409022-65409311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
134, 44
               

               
Conread position:
               
429-715
               

               
Cow position:
               
chr11:3393066-3393365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
100, 237
               

               
Conread position:
               
429-715
               

               
Cow position:
               
chr11:71868455-71868765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
431-590
               

               
Cow position:
               
chr11:80616370-80616215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
431-710
               

               
Cow position:
               
chr11:4662908-4663197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
431-715
               

               
Cow position:
               
chr11:36112564-36112265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 144
               

               
Conread position:
               
431-715
               

               
Cow position:
               
chr11:67804891-67804595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 170
               

               
Conread position:
               
431-715
               

               
Cow position:
               
chr11:82940480-82940778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
432-658
               

               
Cow position:
               
chr11:84977220-84977438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
432-699
               

               
Cow position:
               
chr11:69307655-69307359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
432-710
               

               
Cow position:
               
chr11:83926185-83925895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
432-720
               

               
Cow position:
               
chr11:20602363-20602066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
433-720
               

               
Cow position:
               
chr11:34113406-34113102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
44, 273
               

               
Conread position:
               
437-714
               

               
Cow position:
               
chr11:59873063-59872776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
443-689
               

               
Cow position:
               
chr11:54334459-54334203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
7, 159
               

               
Conread position:
               
444-715
               

               
Cow position:
               
chr11:70086461-70086168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
453-694
               

               
Cow position:
               
chr11:46953069-46952814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
30, 156
               

               
Conread position:
               
457-690
               

               
Cow position:
               
chr11:64867904-64868147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
457-710
               

               
Cow position:
               
chr11:40573220-40573485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 243
               

               
Conread position:
               
457-715
               

               
Cow position:
               
chr11:76606788-76606527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 144
               

               
Conread position:
               
459-715
               

               
Cow position:
               
chr11:34829672-34829936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
115, 212
               

               
Conread position:
               
460-638
               

               
Cow position:
               
chr11:70826061-70825870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
62, 155
               

               
Conread position:
               
460-667
               

               
Cow position:
               
chr11:5789787-5790000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 142
               

               
Conread position:
               
460-702
               

               
Cow position:
               
chr11:34963184-34962919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
460-703
               

               
Cow position:
               
chr11:41293705-41293966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 256
               

               
Conread position:
               
460-710
               

               
Cow position:
               
chr11:33753797-33754056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
460-711
               

               
Cow position:
               
chr11:70278000-70278261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
69, 150
               

               
Conread position:
               
460-712
               

               
Cow position:
               
chr11:69076023-69075755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
69, 246
               

               
Conread position:
               
460-714
               

               
Cow position:
               
chr11:6633823-6633556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 213
               

               
Conread position:
               
460-715
               

               
Cow position:
               
chr11:1070978-1071248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 247
               

               
Conread position:
               
460-715
               

               
Cow position:
               
chr11:7590301-7590037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
59, 156
               

               
Conread position:
               
460-715
               

               
Cow position:
               
chr11:16906938-16907199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
70, 105
               

               
Conread position:
               
460-715
               

               
Cow position:
               
chr11:30925267-30924993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
52, 216
               

               
Conread position:
               
460-715
               

               
Cow position:
               
chr11:30955113-30954842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 149
               

               
Conread position:
               
460-715
               

               
Cow position:
               
chr11:63847957-63847693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
460-715
               

               
Cow position:
               
chr11:63909556-63909814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
460-715
               

               
Cow position:
               
chr11:83230288-83230547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
52, 116
               

               
Conread position:
               
460-719
               

               
Cow position:
               
chr11:17831110-17831379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
460-719
               

               
Cow position:
               
chr11:18086237-18086497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
116, 10
               

               
Conread position:
               
460-720
               

               
Cow position:
               
chr11:63917364-63917628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 186
               

               
Conread position:
               
461-711
               

               
Cow position:
               
chr11:32436446-32436179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 217
               

               
Conread position:
               
461-715
               

               
Cow position:
               
chr11:62155750-62155468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
461-720
               

               
Cow position:
               
chr11:3234185-3233922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 14
               

               
Conread position:
               
462-663
               

               
Cow position:
               
chr11:71341354-71341571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
463-710
               

               
Cow position:
               
chr11:35684392-35684646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
464-671
               

               
Cow position:
               
chr11:72333697-72333479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 146
               

               
Conread position:
               
464-689
               

               
Cow position:
               
chr11:71807458-71807702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
464-715
               

               
Cow position:
               
chr11:36238886-36238627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
65, 237
               

               
Conread position:
               
465-679
               

               
Cow position:
               
chr11:71168497-71168710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 37
               

               
Conread position:
               
465-694
               

               
Cow position:
               
chr11:70838182-70838429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
465-709
               

               
Cow position:
               
chr11:23137947-23138212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
465-714
               

               
Cow position:
               
chr11:23586748-23586482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
12, 197
               

               
Conread position:
               
465-715
               

               
Cow position:
               
chr11:33311085-33310813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 185
               

               
Conread position:
               
465-715
               

               
Cow position:
               
chr11:38577671-38577930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 98
               

               
Conread position:
               
465-715
               

               
Cow position:
               
chr11:40478745-40479011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 135
               

               
Conread position:
               
465-715
               

               
Cow position:
               
chr11:71501024-71501292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
465-719
               

               
Cow position:
               
chr11:63482321-63482587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
465-720
               

               
Cow position:
               
chr11:36658716-36658979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
466-715
               

               
Cow position:
               
chr11:43430348-43430607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 202
               

               
Conread position:
               
466-715
               

               
Cow position:
               
chr11:44636648-44636914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
466-715
               

               
Cow position:
               
chr11:80530465-80530209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
466-720
               

               
Cow position:
               
chr11:10388518-10388759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
467-684
               

               
Cow position:
               
chr11:33345551-33345317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
467-715
               

               
Cow position:
               
chr11:61958639-61958903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
468-714
               

               
Cow position:
               
chr11:36799203-36799458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
468-715
               

               
Cow position:
               
chr11:15373944-15373695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
469-692
               

               
Cow position:
               
chr11:3769205-3769426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
61, 118
               

               
Conread position:
               
469-714
               

               
Cow position:
               
chr11:26483809-26483558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 29
               

               
Conread position:
               
470-703
               

               
Cow position:
               
chr11:77118802-77118564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 93
               

               
Conread position:
               
470-708
               

               
Cow position:
               
chr11:86720315-86720561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
470-709
               

               
Cow position:
               
chr11:8840653-8840888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
103, 41
               

               
Conread position:
               
470-711
               

               
Cow position:
               
chr11:80761275-80761533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
473-711
               

               
Cow position:
               
chr11:8339321-8339558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 48
               

               
Conread position:
               
476-694
               

               
Cow position:
               
chr11:70745438-70745663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 143
               

               
Conread position:
               
476-713
               

               
Cow position:
               
chr11:23232423-23232669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
53, 221
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chr11:76114739-76114499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 131
               

               
Conread position:
               
476-715
               

               
Cow position:
               
chr11:1362371-1362634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
476-715
               

               
Cow position:
               
chr11:41809396-41809631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 135
               

               
Conread position:
               
476-719
               

               
Cow position:
               
chr11:23128443-23128704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 231
               

               
Conread position:
               
477-711
               

               
Cow position:
               
chr11:8147803-8148049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 212
               

               
Conread position:
               
477-711
               

               
Cow position:
               
chr11:73512348-73512584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
477-714
               

               
Cow position:
               
chr11:45897964-45898208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
477-715
               

               
Cow position:
               
chr11:377546-377802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
477-715
               

               
Cow position:
               
chr11:1157739-1157488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 79
               

               
Conread position:
               
477-715
               

               
Cow position:
               
chr11:5031680-5031931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
477-715
               

               
Cow position:
               
chr11:34032103-34032359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
477-715
               

               
Cow position:
               
chr11:36849012-36848770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
52, 101
               

               
Conread position:
               
477-715
               

               
Cow position:
               
chr11:56518216-56518466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
477-715
               

               
Cow position:
               
chr11:77128756-77128503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 189
               

               
Conread position:
               
478-680
               

               
Cow position:
               
chr11:14466392-14466610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
52, 215
               

               
Conread position:
               
478-720
               

               
Cow position:
               
chr11:25387163-25386902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 231
               

               
Conread position:
               
479-715
               

               
Cow position:
               
chr11:30879761-30879526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 104
               

               
Conread position:
               
479-719
               

               
Cow position:
               
chr11:36286779-36286534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
480-692
               

               
Cow position:
               
chr11:39118850-39118618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
480-703
               

               
Cow position:
               
chr11:67246878-67246648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
484-715
               

               
Cow position:
               
chr11:64638437-64638690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
485-711
               

               
Cow position:
               
chr11:33341057-33341298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 221
               

               
Conread position:
               
485-715
               

               
Cow position:
               
chr11:3833276-3833508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
489-709
               

               
Cow position:
               
chr11:60143219-60143450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
489-718
               

               
Cow position:
               
chr11:40258338-40258571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
489-720
               

               
Cow position:
               
chr11:44642208-44642448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
493-710
               

               
Cow position:
               
chr11:52983755-52983525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
26, 127
               

               
Conread position:
               
497-715
               

               
Cow position:
               
chr11:41175874-41176106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
510-715
               

               
Cow position:
               
chr11:61858849-61859053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
511-665
               

               
Cow position:
               
chr11:75965597-75965757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 101
               

               
Conread position:
               
512-715
               

               
Cow position:
               
chr11:53512136-53511925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
524-715
               

               
Cow position:
               
chr11:42792931-42793129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 173
               

               
Conread position:
               
525-695
               

               
Cow position:
               
chr11:485588-485770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
525-702
               

               
Cow position:
               
chr11:7497606-7497789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
525-703
               

               
Cow position:
               
chr11:61560591-61560770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
525-710
               

               
Cow position:
               
chr11:41426942-41426761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
163, 77
               

               
Conread position:
               
525-710
               

               
Cow position:
               
chr11:41811874-41812061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 153
               

               
Conread position:
               
525-713
               

               
Cow position:
               
chr11:80787866-80788067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
525-714
               

               
Cow position:
               
chr11:50778408-50778218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
525-715
               

               
Cow position:
               
chr11:18341000-18341192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 166
               

               
Conread position:
               
525-720
               

               
Cow position:
               
chr11:30597034-30596825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
526-715
               

               
Cow position:
               
chr11:67207769-67207584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
526-715
               

               
Cow position:
               
chr11:67747324-67747128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 167
               

               
Conread position:
               
527-715
               

               
Cow position:
               
chr11:24585220-24585022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 175
               

               
Conread position:
               
528-708
               

               
Cow position:
               
chr11:70273344-70273157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
47, 172
               

               
Conread position:
               
528-714
               

               
Cow position:
               
chr11:38874364-38874559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
528-714
               

               
Cow position:
               
chr11:56348985-56349171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
528-715
               

               
Cow position:
               
chr11:2811692-2811885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 140
               

               
Conread position:
               
528-715
               

               
Cow position:
               
chr11:21438246-21438059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
528-715
               

               
Cow position:
               
chr11:48041995-48042196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
528-715
               

               
Cow position:
               
chr11:57170792-57170986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
529-694
               

               
Cow position:
               
chr11:42002911-42003081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 77
               

               
Conread position:
               
529-715
               

               
Cow position:
               
chr11:27386302-27386502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
529-715
               

               
Cow position:
               
chr11:36114193-36114001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
530-711
               

               
Cow position:
               
chr11:18591398-18591584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
530-719
               

               
Cow position:
               
chr11:61246423-61246620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
530-720
               

               
Cow position:
               
chr11:21798965-21798782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
536-715
               

               
Cow position:
               
chr11:10076798-10076609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
536-715
               

               
Cow position:
               
chr11:21427963-21428150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
536-718
               

               
Cow position:
               
chr11:56654585-56654389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
538-715
               

               
Cow position:
               
chr11:48697476-48697290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
540-715
               

               
Cow position:
               
chr11:81174910-81174733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
541-715
               

               
Cow position:
               
chr11:2309898-2309716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
543-715
               

               
Cow position:
               
chr11:30120646-30120822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
546-711
               

               
Cow position:
               
chr11:83196517-83196346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 153
               

               
Conread position:
               
550-694
               

               
Cow position:
               
chr11:62979506-62979352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
550-702
               

               
Cow position:
               
chr11:51626978-51626819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
550-713
               

               
Cow position:
               
chr11:33468726-33468557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
550-715
               

               
Cow position:
               
chr11:37347494-37347320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
551-715
               

               
Cow position:
               
chr11:63499315-63499480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
551-720
               

               
Cow position:
               
chr11:9837086-9837263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
556-714
               

               
Cow position:
               
chr11:65435864-65435698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
557-711
               

               
Cow position:
               
chr11:53130822-53130658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
557-715
               

               
Cow position:
               
chr11:32610005-32609846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
570-715
               

               
Cow position:
               
chr11:71846353-71846502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 124
               

               
Conread position:
               
571-713
               

               
Cow position:
               
chr11:47586359-47586503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 50
               

               
Conread position:
               
571-714
               

               
Cow position:
               
chr11:63516818-63516671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
571-717
               

               
Cow position:
               
chr11:62965557-62965711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
571-720
               

               
Cow position:
               
chr11:33364335-33364181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 81
               

               
Conread position:
               
572-715
               

               
Cow position:
               
chr11:77241360-77241215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
574-714
               

               
Cow position:
               
chr11:62808664-62808805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
574-715
               

               
Cow position:
               
chr11:35149149-35149004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
575-719
               

               
Cow position:
               
chr11:49106044-49105893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
576-711
               

               
Cow position:
               
chr11:71455778-71455638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
577-715
               

               
Cow position:
               
chr11:75748419-75748277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
16, 95
               

               
Conread position:
               
580-715
               

               
Cow position:
               
chr11:8105760-8105625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
580-715
               

               
Cow position:
               
chr11:43914190-43914055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
583-720
               

               
Cow position:
               
chr11:21819469-21819607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
584-699
               

               
Cow position:
               
chr11:10837555-10837669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
587-715
               

               
Cow position:
               
chr11:36361917-36362041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
595-714
               

               
Cow position:
               
chr11:29266504-29266385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
601-715
               

               
Cow position:
               
chr11:29786647-29786762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
602-695
               

               
Cow position:
               
chr11:86894633-86894541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
603-715
               

               
Cow position:
               
chr11:77208002-77207891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 67
               
Show alignments to all cow chromosomes.