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Cow genome map

           
Conread name:
           
Ss1.1-Mixc-0027f08.3
        

               
Conread position:
               
55-715
               

               
Cow position:
               
chr27:714922-715598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
474, 568
               

               
Conread position:
               
338-654
               

               
Cow position:
               
chr27:23560328-23559995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
338-715
               

               
Cow position:
               
chr27:12191757-12191394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
340-563
               

               
Cow position:
               
chr27:9504262-9504489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
341-664
               

               
Cow position:
               
chr27:26852874-26852547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
7, 48
               

               
Conread position:
               
343-550
               

               
Cow position:
               
chr27:10581240-10581456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
344-567
               

               
Cow position:
               
chr27:19741681-19741468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
345-691
               

               
Cow position:
               
chr27:26481489-26481140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
346-555
               

               
Cow position:
               
chr27:23069808-23070022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 127
               

               
Conread position:
               
350-517
               

               
Cow position:
               
chr27:24358052-24358218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
351-528
               

               
Cow position:
               
chr27:20826084-20825896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
353-590
               

               
Cow position:
               
chr27:672377-672622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 179
               

               
Conread position:
               
355-694
               

               
Cow position:
               
chr27:20749282-20748932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
355-715
               

               
Cow position:
               
chr27:15867110-15867493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
356-715
               

               
Cow position:
               
chr27:28932082-28931696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
356-717
               

               
Cow position:
               
chr27:19500518-19500137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
43, 151
               

               
Conread position:
               
357-516
               

               
Cow position:
               
chr27:20055742-20055902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
37, 121
               

               
Conread position:
               
357-694
               

               
Cow position:
               
chr27:15315249-15315580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 18
               

               
Conread position:
               
357-715
               

               
Cow position:
               
chr27:22439855-22440232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
357-720
               

               
Cow position:
               
chr27:29831990-29831587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
358-639
               

               
Cow position:
               
chr27:11561498-11561796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
358-715
               

               
Cow position:
               
chr27:27632871-27632515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
158, 8
               

               
Conread position:
               
358-720
               

               
Cow position:
               
chr27:28922172-28921798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
359-632
               

               
Cow position:
               
chr27:11982926-11982635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
360-619
               

               
Cow position:
               
chr27:24303668-24303940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
362-720
               

               
Cow position:
               
chr27:2592266-2592649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
363-542
               

               
Cow position:
               
chr27:1779122-1778945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
140, 35
               

               
Conread position:
               
364-697
               

               
Cow position:
               
chr27:13869343-13869700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
32, 315
               

               
Conread position:
               
364-711
               

               
Cow position:
               
chr27:30914733-30915097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 205
               

               
Conread position:
               
364-719
               

               
Cow position:
               
chr27:11480912-11480530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
365-688
               

               
Cow position:
               
chr27:1768895-1768553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
366-529
               

               
Cow position:
               
chr27:22583472-22583642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
366-557
               

               
Cow position:
               
chr27:26983893-26984092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
366-579
               

               
Cow position:
               
chr27:29308076-29308295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
368-574
               

               
Cow position:
               
chr27:26173227-26173443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
368-715
               

               
Cow position:
               
chr27:19546790-19546411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 128
               

               
Conread position:
               
368-719
               

               
Cow position:
               
chr27:17995210-17994843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
368-719
               

               
Cow position:
               
chr27:27554947-27554583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
94, 29
               

               
Conread position:
               
370-509
               

               
Cow position:
               
chr27:16505173-16505035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
370-681
               

               
Cow position:
               
chr27:31373242-31372916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
19, 166
               

               
Conread position:
               
371-528
               

               
Cow position:
               
chr27:26467826-26467664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
371-662
               

               
Cow position:
               
chr27:29593889-29593585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
101, 26
               

               
Conread position:
               
371-719
               

               
Cow position:
               
chr27:26224521-26224173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
101, 26
               

               
Conread position:
               
374-720
               

               
Cow position:
               
chr27:28518035-28518390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
375-517
               

               
Cow position:
               
chr27:29458063-29458215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
375-641
               

               
Cow position:
               
chr27:26794048-26793766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 126
               

               
Conread position:
               
375-658
               

               
Cow position:
               
chr27:31386891-31386603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
95, 22
               

               
Conread position:
               
375-688
               

               
Cow position:
               
chr27:4944768-4944449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
154, 87
               

               
Conread position:
               
375-694
               

               
Cow position:
               
chr27:16088528-16088884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 144
               

               
Conread position:
               
375-715
               

               
Cow position:
               
chr27:26509418-26509065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
85, 186
               

               
Conread position:
               
376-517
               

               
Cow position:
               
chr27:5227575-5227439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
376-529
               

               
Cow position:
               
chr27:21101552-21101395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
376-574
               

               
Cow position:
               
chr27:18791774-18791562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
376-578
               

               
Cow position:
               
chr27:10394711-10394903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
376-578
               

               
Cow position:
               
chr27:28253975-28254189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
376-600
               

               
Cow position:
               
chr27:27740554-27740320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 216
               

               
Conread position:
               
376-640
               

               
Cow position:
               
chr27:25151828-25152103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
81, 199
               

               
Conread position:
               
376-650
               

               
Cow position:
               
chr27:13255053-13254772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
376-668
               

               
Cow position:
               
chr27:15865347-15865660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
376-674
               

               
Cow position:
               
chr27:31151123-31151432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
108, 37
               

               
Conread position:
               
376-681
               

               
Cow position:
               
chr27:18507385-18507704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
376-710
               

               
Cow position:
               
chr27:17472553-17472903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 72
               

               
Conread position:
               
376-715
               

               
Cow position:
               
chr27:11435585-11435226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
376-715
               

               
Cow position:
               
chr27:15865969-15866319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
153, 21
               

               
Conread position:
               
376-715
               

               
Cow position:
               
chr27:22614594-22614928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 214
               

               
Conread position:
               
376-715
               

               
Cow position:
               
chr27:27438768-27438409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
93, 21
               

               
Conread position:
               
376-718
               

               
Cow position:
               
chr27:12515932-12516293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 272
               

               
Conread position:
               
376-720
               

               
Cow position:
               
chr27:16103550-16103906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 145
               

               
Conread position:
               
378-715
               

               
Cow position:
               
chr27:4858878-4858551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
199, 85
               

               
Conread position:
               
379-494
               

               
Cow position:
               
chr27:15697329-15697442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
379-499
               

               
Cow position:
               
chr27:14675431-14675310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
379-513
               

               
Cow position:
               
chr27:25000225-25000081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
379-520
               

               
Cow position:
               
chr27:19779621-19779763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
379-520
               

               
Cow position:
               
chr27:19805953-19805807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
379-528
               

               
Cow position:
               
chr27:11145622-11145773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
20, 118
               

               
Conread position:
               
379-528
               

               
Cow position:
               
chr27:29399351-29399498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
379-562
               

               
Cow position:
               
chr27:22497772-22497957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
140, 20
               

               
Conread position:
               
379-568
               

               
Cow position:
               
chr27:14472434-14472242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
379-710
               

               
Cow position:
               
chr27:20045638-20045976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
379-715
               

               
Cow position:
               
chr27:17331233-17331594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
6, 206
               

               
Conread position:
               
379-715
               

               
Cow position:
               
chr27:22547648-22547313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
15, 99
               

               
Conread position:
               
379-720
               

               
Cow position:
               
chr27:29816886-29816523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
380-510
               

               
Cow position:
               
chr27:29056055-29056183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
380-528
               

               
Cow position:
               
chr27:19074282-19074128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 137
               

               
Conread position:
               
380-581
               

               
Cow position:
               
chr27:22792577-22792786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
380-587
               

               
Cow position:
               
chr27:19557140-19557349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
380-659
               

               
Cow position:
               
chr27:12459036-12459321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
380-715
               

               
Cow position:
               
chr27:15925089-15925439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
380-719
               

               
Cow position:
               
chr27:6550203-6550557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
380-720
               

               
Cow position:
               
chr27:15453955-15454310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
381-469
               

               
Cow position:
               
chr27:31479018-31479106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
381-510
               

               
Cow position:
               
chr27:29877731-29877597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
381-520
               

               
Cow position:
               
chr27:6751921-6752067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chr27:19991891-19992043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chr27:21054202-21054354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
381-528
               

               
Cow position:
               
chr27:23527754-23527607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
381-574
               

               
Cow position:
               
chr27:1184431-1184230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
381-574
               

               
Cow position:
               
chr27:11349030-11349223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
381-574
               

               
Cow position:
               
chr27:16246551-16246754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
381-584
               

               
Cow position:
               
chr27:27012440-27012648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
76, 190
               

               
Conread position:
               
381-585
               

               
Cow position:
               
chr27:11133832-11134045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 162
               

               
Conread position:
               
381-586
               

               
Cow position:
               
chr27:10404372-10404153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
381-586
               

               
Cow position:
               
chr27:27450138-27449924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
381-658
               

               
Cow position:
               
chr27:5553216-5553510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
381-659
               

               
Cow position:
               
chr27:18882401-18882695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
150, 45
               

               
Conread position:
               
381-686
               

               
Cow position:
               
chr27:22220293-22220623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
381-702
               

               
Cow position:
               
chr27:10307558-10307221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
381-710
               

               
Cow position:
               
chr27:29185100-29184748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
381-711
               

               
Cow position:
               
chr27:4390516-4390166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
381-711
               

               
Cow position:
               
chr27:22035628-22035286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
381-713
               

               
Cow position:
               
chr27:30582481-30582833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
21, 47
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr27:16704993-16705342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 301
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr27:18543733-18544094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr27:20354343-20354679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 193
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr27:22386630-22386965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr27:24446394-24446063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
138, 91
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr27:24477171-24477508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
138, 17
               

               
Conread position:
               
381-715
               

               
Cow position:
               
chr27:26226543-26226195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
381-719
               

               
Cow position:
               
chr27:5744601-5744964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
381-719
               

               
Cow position:
               
chr27:7346411-7346763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 129
               

               
Conread position:
               
381-719
               

               
Cow position:
               
chr27:7615326-7614989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
18, 75
               

               
Conread position:
               
381-719
               

               
Cow position:
               
chr27:19496621-19496974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 127
               

               
Conread position:
               
382-572
               

               
Cow position:
               
chr27:13204210-13204404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
137, 94
               

               
Conread position:
               
382-574
               

               
Cow position:
               
chr27:5539949-5539748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
382-612
               

               
Cow position:
               
chr27:28015989-28015750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
382-656
               

               
Cow position:
               
chr27:23507392-23507687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 234
               

               
Conread position:
               
382-671
               

               
Cow position:
               
chr27:23859905-23860221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
382-711
               

               
Cow position:
               
chr27:17397706-17397359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
382-711
               

               
Cow position:
               
chr27:20637313-20636975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 117
               

               
Conread position:
               
382-719
               

               
Cow position:
               
chr27:28002058-28001709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 82
               

               
Conread position:
               
382-720
               

               
Cow position:
               
chr27:16478575-16478239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
151, 18
               

               
Conread position:
               
383-555
               

               
Cow position:
               
chr27:30444926-30444752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
383-563
               

               
Cow position:
               
chr27:11208812-11208618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
383-634
               

               
Cow position:
               
chr27:19508757-19509030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
383-640
               

               
Cow position:
               
chr27:1637179-1636914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
146, 10
               

               
Conread position:
               
383-715
               

               
Cow position:
               
chr27:299628-299292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
383-715
               

               
Cow position:
               
chr27:23545594-23545225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
383-715
               

               
Cow position:
               
chr27:30764780-30765133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
383-719
               

               
Cow position:
               
chr27:18646403-18646046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
91, 103
               

               
Conread position:
               
383-719
               

               
Cow position:
               
chr27:25809770-25809416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
58, 219
               

               
Conread position:
               
384-520
               

               
Cow position:
               
chr27:20785869-20786010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
384-574
               

               
Cow position:
               
chr27:9977432-9977630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
386-529
               

               
Cow position:
               
chr27:178612-178758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
386-572
               

               
Cow position:
               
chr27:24693166-24693358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
386-710
               

               
Cow position:
               
chr27:6499807-6500151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
386-714
               

               
Cow position:
               
chr27:1902818-1903152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
66, 221
               

               
Conread position:
               
386-714
               

               
Cow position:
               
chr27:12596531-12596859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 89
               

               
Conread position:
               
386-714
               

               
Cow position:
               
chr27:24331464-24331819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
388-619
               

               
Cow position:
               
chr27:10323595-10323825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 120
               

               
Conread position:
               
388-664
               

               
Cow position:
               
chr27:29613736-29613442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
388-706
               

               
Cow position:
               
chr27:24228053-24227712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
48, 279
               

               
Conread position:
               
389-571
               

               
Cow position:
               
chr27:20048389-20048578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
389-715
               

               
Cow position:
               
chr27:30407295-30406942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
390-582
               

               
Cow position:
               
chr27:20484487-20484687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
140, 7
               

               
Conread position:
               
390-668
               

               
Cow position:
               
chr27:20869930-20869643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
17, 218
               

               
Conread position:
               
390-687
               

               
Cow position:
               
chr27:20514578-20514889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
390-694
               

               
Cow position:
               
chr27:16965328-16965648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 196
               

               
Conread position:
               
390-715
               

               
Cow position:
               
chr27:18558111-18558455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 335
               

               
Conread position:
               
390-720
               

               
Cow position:
               
chr27:6541388-6541731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 212
               

               
Conread position:
               
391-512
               

               
Cow position:
               
chr27:28472939-28472812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
391-527
               

               
Cow position:
               
chr27:19653823-19653678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
391-528
               

               
Cow position:
               
chr27:30441456-30441599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
391-574
               

               
Cow position:
               
chr27:25790056-25790239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
391-574
               

               
Cow position:
               
chr27:26400963-26400774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
139, 68
               

               
Conread position:
               
391-590
               

               
Cow position:
               
chr27:26121512-26121727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
391-614
               

               
Cow position:
               
chr27:26565549-26565779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 166
               

               
Conread position:
               
391-632
               

               
Cow position:
               
chr27:26437366-26437105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
391-650
               

               
Cow position:
               
chr27:6290228-6290503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
391-651
               

               
Cow position:
               
chr27:19932820-19933097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
68, 230
               

               
Conread position:
               
391-655
               

               
Cow position:
               
chr27:14269576-14269306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
391-663
               

               
Cow position:
               
chr27:1190725-1190431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-690
               

               
Cow position:
               
chr27:26112163-26111838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 6
               

               
Conread position:
               
391-694
               

               
Cow position:
               
chr27:15870913-15871236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
80, 248
               

               
Conread position:
               
391-698
               

               
Cow position:
               
chr27:6924836-6925167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 325
               

               
Conread position:
               
391-698
               

               
Cow position:
               
chr27:28896632-28896957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
69, 179
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr27:11151426-11151766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr27:20078619-20078957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
391-710
               

               
Cow position:
               
chr27:26163158-26163477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 203
               

               
Conread position:
               
391-711
               

               
Cow position:
               
chr27:1353335-1353680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
391-711
               

               
Cow position:
               
chr27:27442407-27442079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr27:13875487-13875826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 128
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr27:27003504-27003181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
80, 21
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr27:27020341-27020007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 41
               

               
Conread position:
               
391-715
               

               
Cow position:
               
chr27:30872303-30871964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
67, 273
               

               
Conread position:
               
391-718
               

               
Cow position:
               
chr27:23128219-23128552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 139
               

               
Conread position:
               
391-719
               

               
Cow position:
               
chr27:13639233-13638893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
79, 198
               

               
Conread position:
               
391-720
               

               
Cow position:
               
chr27:22513927-22513576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
68, 278
               

               
Conread position:
               
392-520
               

               
Cow position:
               
chr27:18215404-18215278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
392-572
               

               
Cow position:
               
chr27:19576567-19576378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 5
               

               
Conread position:
               
392-662
               

               
Cow position:
               
chr27:30884993-30885269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
83, 118
               

               
Conread position:
               
392-683
               

               
Cow position:
               
chr27:27405315-27405005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 225
               

               
Conread position:
               
392-711
               

               
Cow position:
               
chr27:22171057-22171391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
78, 67
               

               
Conread position:
               
392-715
               

               
Cow position:
               
chr27:10992129-10992449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
137, 56
               

               
Conread position:
               
392-715
               

               
Cow position:
               
chr27:19387776-19388109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
393-528
               

               
Cow position:
               
chr27:23760222-23760087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
393-711
               

               
Cow position:
               
chr27:23594075-23594407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 264
               

               
Conread position:
               
393-715
               

               
Cow position:
               
chr27:30890057-30890382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
123, 79
               

               
Conread position:
               
393-718
               

               
Cow position:
               
chr27:8353251-8353571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
394-515
               

               
Cow position:
               
chr27:20561345-20561463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
394-529
               

               
Cow position:
               
chr27:24952195-24952059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
394-573
               

               
Cow position:
               
chr27:26118254-26118446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
394-584
               

               
Cow position:
               
chr27:20266469-20266269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
394-586
               

               
Cow position:
               
chr27:31248849-31248656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
136, 183
               

               
Conread position:
               
394-604
               

               
Cow position:
               
chr27:26245789-26245565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
394-605
               

               
Cow position:
               
chr27:29246387-29246174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
394-609
               

               
Cow position:
               
chr27:22245399-22245611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
394-617
               

               
Cow position:
               
chr27:6241435-6241201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
394-658
               

               
Cow position:
               
chr27:13940793-13940520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
394-681
               

               
Cow position:
               
chr27:8062595-8062292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 110
               

               
Conread position:
               
394-681
               

               
Cow position:
               
chr27:23452220-23452521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
394-682
               

               
Cow position:
               
chr27:26984111-26984412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
138, 54
               

               
Conread position:
               
394-688
               

               
Cow position:
               
chr27:22225812-22225526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
171, 69
               

               
Conread position:
               
394-697
               

               
Cow position:
               
chr27:26087077-26087371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
394-699
               

               
Cow position:
               
chr27:23929735-23930053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
125, 66
               

               
Conread position:
               
394-703
               

               
Cow position:
               
chr27:28190434-28190134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
128, 70
               

               
Conread position:
               
394-709
               

               
Cow position:
               
chr27:14670623-14670295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
78, 209
               

               
Conread position:
               
394-711
               

               
Cow position:
               
chr27:7412150-7412470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 211
               

               
Conread position:
               
394-714
               

               
Cow position:
               
chr27:26643460-26643772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
145, 34
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:426727-427064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 166
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:7649834-7649493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:7935398-7935060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:10979617-10979955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 295
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:14343678-14343371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 43
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:15669017-15668675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
80, 214
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:26218485-26218802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:29431233-29431552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
135, 69
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:29494141-29493817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
394-715
               

               
Cow position:
               
chr27:30868994-30868647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 311
               

               
Conread position:
               
394-717
               

               
Cow position:
               
chr27:10582128-10582462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
394-719
               

               
Cow position:
               
chr27:6787709-6788055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
394-719
               

               
Cow position:
               
chr27:16786588-16786922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
69, 108
               

               
Conread position:
               
394-720
               

               
Cow position:
               
chr27:23735727-23736062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
57, 9
               

               
Conread position:
               
395-597
               

               
Cow position:
               
chr27:27648557-27648344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 208
               

               
Conread position:
               
396-520
               

               
Cow position:
               
chr27:23774977-23774853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
397-590
               

               
Cow position:
               
chr27:6162643-6162443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
132, 74
               

               
Conread position:
               
397-590
               

               
Cow position:
               
chr27:18435370-18435166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
397-689
               

               
Cow position:
               
chr27:19314640-19314338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 131
               

               
Conread position:
               
398-566
               

               
Cow position:
               
chr27:21951219-21951039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
398-574
               

               
Cow position:
               
chr27:17102661-17102843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
398-574
               

               
Cow position:
               
chr27:20548571-20548758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
398-616
               

               
Cow position:
               
chr27:20897259-20897033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
398-619
               

               
Cow position:
               
chr27:8790981-8790747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
398-658
               

               
Cow position:
               
chr27:212712-213003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
398-673
               

               
Cow position:
               
chr27:8962480-8962202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
178, 30
               

               
Conread position:
               
398-693
               

               
Cow position:
               
chr27:23582635-23582937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 193
               

               
Conread position:
               
398-715
               

               
Cow position:
               
chr27:2957178-2957496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
131, 78
               

               
Conread position:
               
398-718
               

               
Cow position:
               
chr27:28018084-28018431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
398-720
               

               
Cow position:
               
chr27:3306547-3306872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
399-568
               

               
Cow position:
               
chr27:4414053-4413877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
130, 8
               

               
Conread position:
               
399-715
               

               
Cow position:
               
chr27:20283406-20283737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
135, 63
               

               
Conread position:
               
400-618
               

               
Cow position:
               
chr27:27058642-27058407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
65, 96
               

               
Conread position:
               
400-628
               

               
Cow position:
               
chr27:30455756-30455998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
58, 233
               

               
Conread position:
               
400-695
               

               
Cow position:
               
chr27:13411605-13411287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
400-715
               

               
Cow position:
               
chr27:26428365-26428037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 99
               

               
Conread position:
               
400-720
               

               
Cow position:
               
chr27:22602938-22603271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
46, 173
               

               
Conread position:
               
401-587
               

               
Cow position:
               
chr27:29160220-29160022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 182
               

               
Conread position:
               
401-720
               

               
Cow position:
               
chr27:29380625-29380960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
403-572
               

               
Cow position:
               
chr27:232317-232499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
403-584
               

               
Cow position:
               
chr27:26909822-26909633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
403-681
               

               
Cow position:
               
chr27:28260768-28260477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
40, 16
               

               
Conread position:
               
403-703
               

               
Cow position:
               
chr27:26865342-26865037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
61, 92
               

               
Conread position:
               
403-715
               

               
Cow position:
               
chr27:15409259-15408948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
403-715
               

               
Cow position:
               
chr27:19589249-19589566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 23
               

               
Conread position:
               
403-720
               

               
Cow position:
               
chr27:8630107-8629771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 44
               

               
Conread position:
               
405-576
               

               
Cow position:
               
chr27:29388440-29388621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
405-714
               

               
Cow position:
               
chr27:11815979-11815665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
405-715
               

               
Cow position:
               
chr27:22330890-22330573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
124, 52
               

               
Conread position:
               
405-715
               

               
Cow position:
               
chr27:22560058-22559726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
405-717
               

               
Cow position:
               
chr27:7959063-7958742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
54, 98
               

               
Conread position:
               
405-720
               

               
Cow position:
               
chr27:21393725-21393402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
406-558
               

               
Cow position:
               
chr27:23177543-23177381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
406-615
               

               
Cow position:
               
chr27:11994098-11993875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 205
               

               
Conread position:
               
406-684
               

               
Cow position:
               
chr27:22489041-22489343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
406-694
               

               
Cow position:
               
chr27:11159784-11160070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
124, 65
               

               
Conread position:
               
406-694
               

               
Cow position:
               
chr27:19660697-19661010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 220
               

               
Conread position:
               
406-698
               

               
Cow position:
               
chr27:26424807-26424508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 122
               

               
Conread position:
               
406-710
               

               
Cow position:
               
chr27:22735825-22735512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 206
               

               
Conread position:
               
406-711
               

               
Cow position:
               
chr27:23554560-23554233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 155
               

               
Conread position:
               
406-720
               

               
Cow position:
               
chr27:26490136-26489805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
128, 222
               

               
Conread position:
               
407-709
               

               
Cow position:
               
chr27:13318207-13317869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
407-711
               

               
Cow position:
               
chr27:26188597-26188913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
52, 245
               

               
Conread position:
               
408-571
               

               
Cow position:
               
chr27:24731267-24731096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
408-574
               

               
Cow position:
               
chr27:26236099-26236273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
408-661
               

               
Cow position:
               
chr27:10653453-10653728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 59
               

               
Conread position:
               
408-714
               

               
Cow position:
               
chr27:21669341-21669029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 205
               

               
Conread position:
               
408-715
               

               
Cow position:
               
chr27:18739145-18739483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
408-715
               

               
Cow position:
               
chr27:19685939-19685616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
60, 28
               

               
Conread position:
               
410-574
               

               
Cow position:
               
chr27:24755764-24755935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
410-720
               

               
Cow position:
               
chr27:23890706-23891041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
412-715
               

               
Cow position:
               
chr27:8168646-8168334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
413-694
               

               
Cow position:
               
chr27:22427059-22426756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
415-646
               

               
Cow position:
               
chr27:22553100-22552855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
115, 86
               

               
Conread position:
               
418-694
               

               
Cow position:
               
chr27:21408785-21408486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
421-658
               

               
Cow position:
               
chr27:17646373-17646128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 36
               

               
Conread position:
               
423-699
               

               
Cow position:
               
chr27:11536321-11536021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 273
               

               
Conread position:
               
423-715
               

               
Cow position:
               
chr27:19896549-19896848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
424-715
               

               
Cow position:
               
chr27:13251811-13252101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 52
               

               
Conread position:
               
428-702
               

               
Cow position:
               
chr27:18593084-18593349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
164, 37
               

               
Conread position:
               
431-681
               

               
Cow position:
               
chr27:20812709-20812967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
431-715
               

               
Cow position:
               
chr27:26807763-26807468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
432-711
               

               
Cow position:
               
chr27:20481561-20481286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
432-720
               

               
Cow position:
               
chr27:23632395-23632698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 140
               

               
Conread position:
               
434-715
               

               
Cow position:
               
chr27:26920113-26919807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 244
               

               
Conread position:
               
439-715
               

               
Cow position:
               
chr27:22418962-22418673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
451-705
               

               
Cow position:
               
chr27:7973994-7974261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
457-681
               

               
Cow position:
               
chr27:23877021-23876777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 71
               

               
Conread position:
               
457-684
               

               
Cow position:
               
chr27:4155823-4156067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
457-693
               

               
Cow position:
               
chr27:15215052-15215307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
457-711
               

               
Cow position:
               
chr27:9169813-9169553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
457-715
               

               
Cow position:
               
chr27:4386238-4385967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
73, 245
               

               
Conread position:
               
457-719
               

               
Cow position:
               
chr27:30261069-30260793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
73, 217
               

               
Conread position:
               
458-720
               

               
Cow position:
               
chr27:25276968-25277241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
459-710
               

               
Cow position:
               
chr27:31148587-31148851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
460-647
               

               
Cow position:
               
chr27:22423343-22423538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
460-703
               

               
Cow position:
               
chr27:7731429-7731165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
460-715
               

               
Cow position:
               
chr27:30988624-30988892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
460-719
               

               
Cow position:
               
chr27:22723866-22723604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
460-720
               

               
Cow position:
               
chr27:15643001-15643272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
70, 96
               

               
Conread position:
               
461-661
               

               
Cow position:
               
chr27:17918486-17918273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 140
               

               
Conread position:
               
464-694
               

               
Cow position:
               
chr27:8942859-8942608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
465-653
               

               
Cow position:
               
chr27:18923001-18922796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
465-682
               

               
Cow position:
               
chr27:28035016-28034797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
61, 168
               

               
Conread position:
               
465-694
               

               
Cow position:
               
chr27:27641179-27640927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
465-697
               

               
Cow position:
               
chr27:27039006-27038762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
465-715
               

               
Cow position:
               
chr27:27064608-27064348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
65, 189
               

               
Conread position:
               
465-715
               

               
Cow position:
               
chr27:30359238-30359499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
65, 186
               

               
Conread position:
               
465-717
               

               
Cow position:
               
chr27:22454945-22454681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
28, 147
               

               
Conread position:
               
469-685
               

               
Cow position:
               
chr27:31017990-31017768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
470-720
               

               
Cow position:
               
chr27:26413418-26413153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
60, 138
               

               
Conread position:
               
476-714
               

               
Cow position:
               
chr27:23882525-23882283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 128
               

               
Conread position:
               
476-715
               

               
Cow position:
               
chr27:8263496-8263239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 198
               

               
Conread position:
               
477-714
               

               
Cow position:
               
chr27:30389454-30389202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 227
               

               
Conread position:
               
477-718
               

               
Cow position:
               
chr27:674187-673946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
477-720
               

               
Cow position:
               
chr27:12246497-12246757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
54, 84
               

               
Conread position:
               
478-715
               

               
Cow position:
               
chr27:24371087-24371330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 120
               

               
Conread position:
               
478-715
               

               
Cow position:
               
chr27:26581592-26581340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 229
               

               
Conread position:
               
478-720
               

               
Cow position:
               
chr27:27270698-27270440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
49, 181
               

               
Conread position:
               
486-719
               

               
Cow position:
               
chr27:20497058-20497313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
496-715
               

               
Cow position:
               
chr27:1058813-1058588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 158
               

               
Conread position:
               
497-711
               

               
Cow position:
               
chr27:27844129-27843905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
525-681
               

               
Cow position:
               
chr27:21975951-21976111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
525-694
               

               
Cow position:
               
chr27:20247906-20247732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
525-715
               

               
Cow position:
               
chr27:12429305-12429498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 46
               

               
Conread position:
               
525-720
               

               
Cow position:
               
chr27:9090892-9090703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
525-720
               

               
Cow position:
               
chr27:30672660-30672461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 86
               

               
Conread position:
               
528-715
               

               
Cow position:
               
chr27:21351120-21350924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
528-715
               

               
Cow position:
               
chr27:24999839-24999643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
528-715
               

               
Cow position:
               
chr27:30354443-30354248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
529-720
               

               
Cow position:
               
chr27:26135049-26135239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
530-720
               

               
Cow position:
               
chr27:25379892-25380093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 173
               

               
Conread position:
               
536-710
               

               
Cow position:
               
chr27:11081110-11081287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
539-720
               

               
Cow position:
               
chr27:2683233-2683042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
542-684
               

               
Cow position:
               
chr27:26786075-26785925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
550-715
               

               
Cow position:
               
chr27:30362170-30362338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
555-697
               

               
Cow position:
               
chr27:26979784-26979630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
556-720
               

               
Cow position:
               
chr27:6522973-6523143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
556-720
               

               
Cow position:
               
chr27:7538148-7537974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 171
               

               
Conread position:
               
561-715
               

               
Cow position:
               
chr27:27550798-27550649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
6, 42
               

               
Conread position:
               
563-720
               

               
Cow position:
               
chr27:8292065-8291902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
571-703
               

               
Cow position:
               
chr27:21569892-21569758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
571-714
               

               
Cow position:
               
chr27:22268449-22268595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 124
               

               
Conread position:
               
571-715
               

               
Cow position:
               
chr27:4011627-4011774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
571-715
               

               
Cow position:
               
chr27:4482908-4482762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 68
               

               
Conread position:
               
571-715
               

               
Cow position:
               
chr27:14902705-14902557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
571-715
               

               
Cow position:
               
chr27:20570068-20570217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
571-715
               

               
Cow position:
               
chr27:26141718-26141867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
571-715
               

               
Cow position:
               
chr27:28038391-28038246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
571-720
               

               
Cow position:
               
chr27:1183936-1183777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 103
               

               
Conread position:
               
571-720
               

               
Cow position:
               
chr27:26398310-26398160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 113
               

               
Conread position:
               
571-720
               

               
Cow position:
               
chr27:27259562-27259711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
572-715
               

               
Cow position:
               
chr27:29283459-29283313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
578-711
               

               
Cow position:
               
chr27:25790759-25790895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
580-702
               

               
Cow position:
               
chr27:29236542-29236663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
584-694
               

               
Cow position:
               
chr27:20591948-20592056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
587-689
               

               
Cow position:
               
chr27:16025844-16025744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
592-694
               

               
Cow position:
               
chr27:17102975-17103078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
595-720
               

               
Cow position:
               
chr27:29399790-29399916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
596-700
               

               
Cow position:
               
chr27:18491825-18491928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 59
               
Show alignments to all cow chromosomes.