Cow genome map

Conread name: Ss1.1-Mixc-0028p05.3

Conread position: 1-364
Cow position:
Alignm length: 370
Alignm identity: 248
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 48, 69

Conread position: 1-486
Cow position:
Alignm length: 491
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 20

Conread position: 1-581
Cow position:
Alignm length: 589
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 455

Conread position: 3-581
Cow position:
Alignm length: 589
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 455

Conread position: 15-339
Cow position:
Alignm length: 330
Alignm identity: 208
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 15-404
Cow position:
Alignm length: 394
Alignm identity: 248
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 18

Conread position: 15-465
Cow position:
Alignm length: 455
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 364

Conread position: 15-528
Cow position:
Alignm length: 519
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 15-532
Cow position:
Alignm length: 523
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 15-532
Cow position:
Alignm length: 525
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 125

Conread position: 15-579
Cow position:
Alignm length: 571
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 415

Conread position: 19-581
Cow position:
Alignm length: 572
Alignm identity: 349
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 30, 383

Conread position: 22-522
Cow position:
Alignm length: 517
Alignm identity: 305
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 204

Conread position: 23-280
Cow position:
Alignm length: 264
Alignm identity: 175
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 15, 118

Conread position: 34-581
Cow position:
Alignm length: 558
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 97

Conread position: 41-532
Cow position:
Alignm length: 497
Alignm identity: 300
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 252, 264

Conread position: 41-567
Cow position:
Alignm length: 533
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 97

Conread position: 42-546
Cow position:
Alignm length: 508
Alignm identity: 315
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 140, 133

Conread position: 42-567
Cow position:
Alignm length: 531
Alignm identity: 331
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 175, 186

Conread position: 42-581
Cow position:
Alignm length: 544
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 215

Conread position: 42-587
Cow position:
Alignm length: 552
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 198

Conread position: 44-531
Cow position:
Alignm length: 491
Alignm identity: 300
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 423, 439

Conread position: 45-584
Cow position:
Alignm length: 543
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 99

Conread position: 46-322
Cow position:
Alignm length: 278
Alignm identity: 178
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 170, 5

Conread position: 46-581
Cow position:
Alignm length: 539
Alignm identity: 325
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 343, 5

Conread position: 47-530
Cow position:
Alignm length: 489
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 82

Conread position: 47-581
Cow position:
Alignm length: 540
Alignm identity: 335
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 74, 80

Conread position: 48-326
Cow position:
Alignm length: 280
Alignm identity: 186
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 161, 172

Conread position: 48-364
Cow position:
Alignm length: 318
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 161, 169

Conread position: 48-579
Cow position:
Alignm length: 537
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 169

Conread position: 49-532
Cow position:
Alignm length: 489
Alignm identity: 309
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 36

Conread position: 49-579
Cow position:
Alignm length: 536
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 171

Conread position: 49-579
Cow position:
Alignm length: 535
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 171

Conread position: 49-579
Cow position:
Alignm length: 538
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 204

Conread position: 50-458
Cow position:
Alignm length: 409
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 50-579
Cow position:
Alignm length: 536
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 167

Conread position: 51-445
Cow position:
Alignm length: 398
Alignm identity: 252
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 297, 286

Conread position: 51-567
Cow position:
Alignm length: 522
Alignm identity: 319
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 338, 325

Conread position: 51-567
Cow position:
Alignm length: 522
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 333

Conread position: 51-567
Cow position:
Alignm length: 522
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 73

Conread position: 51-581
Cow position:
Alignm length: 536
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 290

Conread position: 51-582
Cow position:
Alignm length: 536
Alignm identity: 322
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 422, 409

Conread position: 52-364
Cow position:
Alignm length: 316
Alignm identity: 202
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 69, 85

Conread position: 52-417
Cow position:
Alignm length: 367
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 160, 168

Conread position: 52-495
Cow position:
Alignm length: 448
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 168

Conread position: 52-519
Cow position:
Alignm length: 475
Alignm identity: 303
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 16, 28

Conread position: 52-522
Cow position:
Alignm length: 476
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 168

Conread position: 52-528
Cow position:
Alignm length: 481
Alignm identity: 302
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 248, 252

Conread position: 52-529
Cow position:
Alignm length: 482
Alignm identity: 285
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 337, 10

Conread position: 52-530
Cow position:
Alignm length: 483
Alignm identity: 301
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 153, 165

Conread position: 52-531
Cow position:
Alignm length: 484
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 150

Conread position: 52-531
Cow position:
Alignm length: 485
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 150

Conread position: 52-532
Cow position:
Alignm length: 486
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 15

Conread position: 52-532
Cow position:
Alignm length: 485
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 316

Conread position: 52-532
Cow position:
Alignm length: 486
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 65

Conread position: 52-533
Cow position:
Alignm length: 487
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 165

Conread position: 52-540
Cow position:
Alignm length: 494
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 42

Conread position: 52-578
Cow position:
Alignm length: 532
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 166

Conread position: 52-579
Cow position:
Alignm length: 533
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 148

Conread position: 52-579
Cow position:
Alignm length: 533
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 165

Conread position: 52-579
Cow position:
Alignm length: 533
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 165

Conread position: 52-583
Cow position:
Alignm length: 538
Alignm identity: 331
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 138, 154

Conread position: 56-532
Cow position:
Alignm length: 480
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 320

Conread position: 56-533
Cow position:
Alignm length: 482
Alignm identity: 300
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 143, 161

Conread position: 58-579
Cow position:
Alignm length: 526
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 147

Conread position: 60-326
Cow position:
Alignm length: 267
Alignm identity: 185
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 60-540
Cow position:
Alignm length: 483
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 0

Conread position: 62-585
Cow position:
Alignm length: 529
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 314

Conread position: 69-570
Cow position:
Alignm length: 506
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 68

Conread position: 69-579
Cow position:
Alignm length: 518
Alignm identity: 321
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 107, 72

Conread position: 69-581
Cow position:
Alignm length: 517
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 226

Conread position: 69-583
Cow position:
Alignm length: 520
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 183

Conread position: 72-458
Cow position:
Alignm length: 388
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 302

Conread position: 72-530
Cow position:
Alignm length: 464
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 38

Conread position: 72-532
Cow position:
Alignm length: 467
Alignm identity: 291
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 58, 66

Conread position: 72-532
Cow position:
Alignm length: 469
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 51

Conread position: 72-567
Cow position:
Alignm length: 500
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 388

Conread position: 72-570
Cow position:
Alignm length: 505
Alignm identity: 321
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 238, 191

Conread position: 72-570
Cow position:
Alignm length: 506
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 145

Conread position: 72-579
Cow position:
Alignm length: 513
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 64

Conread position: 72-579
Cow position:
Alignm length: 514
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 61

Conread position: 73-437
Cow position:
Alignm length: 366
Alignm identity: 222
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 47, 64

Conread position: 73-530
Cow position:
Alignm length: 463
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 144

Conread position: 73-567
Cow position:
Alignm length: 502
Alignm identity: 299
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 293, 308

Conread position: 73-581
Cow position:
Alignm length: 514
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 303

Conread position: 73-581
Cow position:
Alignm length: 516
Alignm identity: 321
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 55, 40

Conread position: 73-581
Cow position:
Alignm length: 512
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 488

Conread position: 73-581
Cow position:
Alignm length: 511
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 74-519
Cow position:
Alignm length: 451
Alignm identity: 276
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 40

Conread position: 74-581
Cow position:
Alignm length: 513
Alignm identity: 316
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 97, 101

Conread position: 75-586
Cow position:
Alignm length: 519
Alignm identity: 324
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 125, 7

Conread position: 76-528
Cow position:
Alignm length: 458
Alignm identity: 283
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 39, 48

Conread position: 82-581
Cow position:
Alignm length: 504
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 307

Conread position: 82-582
Cow position:
Alignm length: 509
Alignm identity: 313
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 37

Conread position: 88-418
Cow position:
Alignm length: 331
Alignm identity: 214
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 88-579
Cow position:
Alignm length: 497
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 129

Conread position: 88-581
Cow position:
Alignm length: 499
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 288

Conread position: 88-601
Cow position:
Alignm length: 521
Alignm identity: 323
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 26, 35

Conread position: 91-578
Cow position:
Alignm length: 493
Alignm identity: 294
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 106, 126

Conread position: 94-582
Cow position:
Alignm length: 492
Alignm identity: 300
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 343, 355

Conread position: 96-581
Cow position:
Alignm length: 490
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 370

Conread position: 103-583
Cow position:
Alignm length: 487
Alignm identity: 307
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 27, 33

Conread position: 127-528
Cow position:
Alignm length: 406
Alignm identity: 247
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 81, 93

Conread position: 133-583
Cow position:
Alignm length: 456
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 87

Conread position: 136-519
Cow position:
Alignm length: 389
Alignm identity: 235
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 159, 145

Conread position: 140-319
Cow position:
Alignm length: 182
Alignm identity: 130
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 67

Conread position: 142-362
Cow position:
Alignm length: 222
Alignm identity: 151
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 199, 195

Conread position: 144-530
Cow position:
Alignm length: 392
Alignm identity: 253
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 58, 85

Conread position: 144-579
Cow position:
Alignm length: 440
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 73

Conread position: 147-581
Cow position:
Alignm length: 437
Alignm identity: 273
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 333, 0

Conread position: 152-567
Cow position:
Alignm length: 420
Alignm identity: 252
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 72, 82

Conread position: 154-581
Cow position:
Alignm length: 431
Alignm identity: 266
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 319, 312

Conread position: 206-583
Cow position:
Alignm length: 384
Alignm identity: 237
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 15

Show alignments to all cow chromosomes.