Cow genome map
| Conread name: | Ss1.1-Mixc-0028p05.3 |
| Conread position: | 1-518 |
| Cow position: | chr17:22473429-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 7-533 |
| Cow position: | chr17:22590255-22589722 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 15-496 |
| Cow position: | chr17:22589657-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 309 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 36, 279 |
| Conread position: | 15-583 |
| Cow position: | chr17:22552155-22551581 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 554 |
| Conread position: | 18-571 |
| Cow position: | chr17:22552068-22551510 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 453 |
| Conread position: | 21-579 |
| Cow position: | chr17:22473200-22473760 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 23-587 |
| Cow position: | chr17:22552904-22552333 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 448 |
| Conread position: | 27-586 |
| Cow position: | chr17:22590149-22589584 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 371 |
| Conread position: | 47-345 |
| Cow position: | chr17:22498831-22498533 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-548 |
| Cow position: | chr17:22552624-22552121 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 258 |
| Conread position: | 47-579 |
| Cow position: | chr17:22552288-22551754 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 439, 518 |
| Conread position: | 50-528 |
| Cow position: | chr17:22452150-22451669 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 302 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 362, 367 |
| Conread position: | 50-579 |
| Cow position: | chr17:22589871-22589340 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 329 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 395, 386 |
| Conread position: | 51-531 |
| Cow position: | chr17:22590290-22589808 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 301 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 385, 398 |
| Conread position: | 51-546 |
| Cow position: | chr17:22452233-22451736 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 436, 0 |
| Conread position: | 52-335 |
| Cow position: | chr17:22551779-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-417 |
| Cow position: | chr17:22551863-22551498 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 205, 201 |
| Conread position: | 52-418 |
| Cow position: | chr17:22498910-22498545 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 52-518 |
| Cow position: | chr17:22589953-22589485 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 155 |
| Conread position: | 52-548 |
| Cow position: | chr17:22499162-22498664 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 238, 219 |
| Conread position: | 52-576 |
| Cow position: | chr17:22452316-22451790 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 513 |
| Conread position: | 52-579 |
| Cow position: | chr17:22552451-22551922 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 417 |
| Conread position: | 52-582 |
| Cow position: | chr17:22499330-22498798 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 420 |
| Conread position: | 52-584 |
| Cow position: | chr17:22552955-22552421 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 514 |
| Conread position: | 64-579 |
| Cow position: | chr17:22552691-22552174 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 408 |
| Conread position: | 70-523 |
| Cow position: | chr17:22499396-22498941 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 403 |
| Conread position: | 70-583 |
| Cow position: | chr17:22473171-22473680 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 75, 31 |
| Conread position: | 72-579 |
| Cow position: | chr17:22552515-22552006 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 150 |
| Conread position: | 72-579 |
| Cow position: | chr17:22553019-22552510 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 399 |
| Conread position: | 73-531 |
| Cow position: | chr17:22553102-22552642 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 227 |
| Conread position: | 73-546 |
| Cow position: | chr17:22473336-22473811 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 73-578 |
| Cow position: | chr17:22473420-22473930 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 0 |
| Conread position: | 73-579 |
| Cow position: | chr17:22452379-22451871 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 493 |
| Conread position: | 126-581 |
| Cow position: | chr17:22452410-22451953 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 128-586 |
| Cow position: | chr17:22553131-22552670 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 130-532 |
| Cow position: | chr17:22590295-22589891 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 356, 0 |
| Conread position: | 152-548 |
| Cow position: | chr17:22499398-22499000 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 205-529 |
| Cow position: | chr17:22553138-22552812 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 231, 253 |
Show alignments to all cow chromosomes.