Cow genome map
| Conread name: | Ss1.1-Mixc-0028p05.3 |
| Conread position: | 1-546 |
| Cow position: | chr19:20677879-20678429 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 332 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 287 |
| Conread position: | 1-579 |
| Cow position: | chr19:23649482-23650065 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 563 |
| Conread position: | 3-555 |
| Cow position: | chr19:23649902-23650461 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 353 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 18, 219 |
| Conread position: | 15-541 |
| Cow position: | chr19:14940518-14941049 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 206 |
| Conread position: | 15-567 |
| Cow position: | chr19:23597139-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 22-579 |
| Cow position: | chr19:14940188-14940751 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 541 |
| Conread position: | 23-557 |
| Cow position: | chr19:14959536-14959011 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 335 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 21, 230 |
| Conread position: | 23-579 |
| Cow position: | chr19:14940021-14940583 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 41-541 |
| Cow position: | chr19:23649357-23649859 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 339 |
| Conread position: | 42-576 |
| Cow position: | chr19:23649778-23650314 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 178 |
| Conread position: | 46-407 |
| Cow position: | chr19:23650119-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 163, 5 |
| Conread position: | 47-407 |
| Cow position: | chr19:14960080-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 321, 267 |
| Conread position: | 48-522 |
| Cow position: | chr19:20678013-20678489 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 160, 183 |
| Conread position: | 49-464 |
| Cow position: | chr19:14948404-14947990 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 163, 173 |
| Conread position: | 49-532 |
| Cow position: | chr19:14960244-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 49-563 |
| Cow position: | chr19:14960328-14959815 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 175 |
| Conread position: | 50-540 |
| Cow position: | chr19:23614588-23615080 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 171 |
| Conread position: | 50-579 |
| Cow position: | chr19:23613580-23614111 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 51-381 |
| Cow position: | chr19:14948318-14947988 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 165, 172 |
| Conread position: | 51-586 |
| Cow position: | chr19:14940389-14940927 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 52-405 |
| Cow position: | chr19:43569990-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 52-411 |
| Cow position: | chr19:14959176-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 52-412 |
| Cow position: | chr19:23614758-23615116 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 154, 136 |
| Conread position: | 52-498 |
| Cow position: | chr19:23649704-23650152 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 292, 298 |
| Conread position: | 52-530 |
| Cow position: | chr19:23613750-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 397 |
| Conread position: | 52-579 |
| Cow position: | chr19:23596930-23597456 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 106 |
| Conread position: | 52-579 |
| Cow position: | chr19:23614506-23615035 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 52-581 |
| Cow position: | chr19:14940474-14941005 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 307 |
| Conread position: | 52-581 |
| Cow position: | chr19:23614170-23614701 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 217 |
| Conread position: | 52-584 |
| Cow position: | chr19:14960409-14959875 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 249 |
| Conread position: | 55-579 |
| Cow position: | chr19:23596849-23597372 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 184 |
| Conread position: | 57-412 |
| Cow position: | chr19:20635394-20635039 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 62, 66 |
| Conread position: | 57-522 |
| Cow position: | chr19:14959582-14959124 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 289 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 432, 274 |
| Conread position: | 57-581 |
| Cow position: | chr19:20635646-20635120 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 329 |
| Conread position: | 62-578 |
| Cow position: | chr19:23613339-23613860 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 159 |
| Conread position: | 63-530 |
| Cow position: | chr19:20677860-20678329 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 296 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 69-546 |
| Cow position: | chr19:14960476-14959999 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 69-557 |
| Cow position: | chr19:23649469-23649959 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 310 |
| Conread position: | 70-532 |
| Cow position: | chr19:20677448-20677911 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 280 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 220, 12 |
| Conread position: | 72-328 |
| Cow position: | chr19:23614862-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 247, 252 |
| Conread position: | 72-341 |
| Cow position: | chr19:20635295-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-377 |
| Cow position: | chr19:14940746-14941051 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 198, 205 |
| Conread position: | 72-415 |
| Cow position: | chr19:14959650-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 72-457 |
| Cow position: | chr19:23597367-23597752 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 366 |
| Conread position: | 72-496 |
| Cow position: | chr19:20678289-20678713 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 290, 286 |
| Conread position: | 72-522 |
| Cow position: | chr19:20677533-20677985 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 72-531 |
| Cow position: | chr19:23613518-23613979 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 148 |
| Conread position: | 72-532 |
| Cow position: | chr19:20678121-20678583 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 72-534 |
| Cow position: | chr19:23614106-23614570 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 113 |
| Conread position: | 72-540 |
| Cow position: | chr19:23614358-23614828 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 72-579 |
| Cow position: | chr19:14939990-14940499 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 0 |
| Conread position: | 72-579 |
| Cow position: | chr19:23597115-23597624 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 311 |
| Conread position: | 72-579 |
| Cow position: | chr19:23649304-23649813 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 72-581 |
| Cow position: | chr19:20677785-20678296 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 211 |
| Conread position: | 72-581 |
| Cow position: | chr19:23613434-23613945 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 232 |
| Conread position: | 72-587 |
| Cow position: | chr19:20635547-20635031 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 145 |
| Conread position: | 73-495 |
| Cow position: | chr19:14940663-14941085 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-496 |
| Cow position: | chr19:23614695-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 112 |
| Conread position: | 73-503 |
| Cow position: | chr19:43570221-43569789 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 148, 143 |
| Conread position: | 73-522 |
| Cow position: | chr19:43570137-43569690 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 126, 130 |
| Conread position: | 73-531 |
| Cow position: | chr19:23614023-23614483 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 397 |
| Conread position: | 73-579 |
| Cow position: | chr19:43570379-43569881 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 196, 101 |
| Conread position: | 76-522 |
| Cow position: | chr19:23614446-23614894 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 47 |
| Conread position: | 83-440 |
| Cow position: | chr19:14948453-14948097 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 94-529 |
| Cow position: | chr19:20677639-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 97, 118 |
| Conread position: | 130-583 |
| Cow position: | chr19:23596840-23597293 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 135-497 |
| Cow position: | chr19:14959670-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 254, 19 |
| Conread position: | 135-579 |
| Cow position: | chr19:23649283-23649729 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 136-592 |
| Cow position: | chr19:43570242-43569782 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 230, 235 |
| Conread position: | 142-531 |
| Cow position: | chr19:14959254-14958869 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 341, 133 |
| Conread position: | 147-581 |
| Cow position: | chr19:14948471-14948038 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 282 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 242, 22 |
| Conread position: | 148-581 |
| Cow position: | chr19:20677441-20677876 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 161, 137 |
| Conread position: | 154-578 |
| Cow position: | chr19:14939988-14940414 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 279 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 117, 132 |
| Conread position: | 169-578 |
| Cow position: | chr19:43570450-43570048 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 53 |
Show alignments to all cow chromosomes.