Cow genome map


           Conread name:
           Ss1.1-Mixc-0028p05.3
        

               Conread position:
               1-546
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               332
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               50, 287
               

               Conread position:
               1-579
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 563
               

               Conread position:
               3-555
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               353
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               18, 219
               

               Conread position:
               15-541
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 206
               

               Conread position:
               15-567
               

               Cow position:
               
               

               Alignm length:
               558
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               22-579
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 541
               

               Conread position:
               23-557
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               335
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               21, 230
               

               Conread position:
               23-579
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               41-541
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               335, 339
               

               Conread position:
               42-576
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 178
               

               Conread position:
               46-407
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               163, 5
               

               Conread position:
               47-407
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               321, 267
               

               Conread position:
               48-522
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               298
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               160, 183
               

               Conread position:
               49-464
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               163, 173
               

               Conread position:
               49-532
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               49-563
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               434, 175
               

               Conread position:
               50-540
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 171
               

               Conread position:
               50-579
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 30
               

               Conread position:
               51-381
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               165, 172
               

               Conread position:
               51-586
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 33
               

               Conread position:
               52-405
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               64, 71
               

               Conread position:
               52-411
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               52-412
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               240
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               154, 136
               

               Conread position:
               52-498
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               281
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               292, 298
               

               Conread position:
               52-530
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               385, 397
               

               Conread position:
               52-579
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               384, 106
               

               Conread position:
               52-579
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 49
               

               Conread position:
               52-581
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 307
               

               Conread position:
               52-581
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 217
               

               Conread position:
               52-584
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               336, 249
               

               Conread position:
               55-579
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 184
               

               Conread position:
               57-412
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               62, 66
               

               Conread position:
               57-522
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               289
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               432, 274
               

               Conread position:
               57-581
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               311, 329
               

               Conread position:
               62-578
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 159
               

               Conread position:
               63-530
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               296
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               65, 53
               

               Conread position:
               69-546
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               69-557
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 310
               

               Conread position:
               70-532
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               280
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               220, 12
               

               Conread position:
               72-328
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               247, 252
               

               Conread position:
               72-341
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               72-377
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               198, 205
               

               Conread position:
               72-415
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               72-457
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               341, 366
               

               Conread position:
               72-496
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               263
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               290, 286
               

               Conread position:
               72-522
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               274
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               391, 0
               

               Conread position:
               72-531
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 148
               

               Conread position:
               72-532
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               292
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               64, 54
               

               Conread position:
               72-534
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 113
               

               Conread position:
               72-540
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 30
               

               Conread position:
               72-579
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               411, 0
               

               Conread position:
               72-579
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 311
               

               Conread position:
               72-579
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 43
               

               Conread position:
               72-581
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 211
               

               Conread position:
               72-581
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 232
               

               Conread position:
               72-587
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 145
               

               Conread position:
               73-495
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               73-496
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 112
               

               Conread position:
               73-503
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               284
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               148, 143
               

               Conread position:
               73-522
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               284
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               126, 130
               

               Conread position:
               73-531
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               365, 397
               

               Conread position:
               73-579
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               319
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               196, 101
               

               Conread position:
               76-522
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 47
               

               Conread position:
               83-440
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               234
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               94-529
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               278
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               97, 118
               

               Conread position:
               130-583
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               286
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               57, 69
               

               Conread position:
               135-497
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               254, 19
               

               Conread position:
               135-579
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               290
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               78, 64
               

               Conread position:
               136-592
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               291
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               230, 235
               

               Conread position:
               142-531
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               341, 133
               

               Conread position:
               147-581
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               282
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               242, 22
               

               Conread position:
               148-581
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               263
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               161, 137
               

               Conread position:
               154-578
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               279
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               117, 132
               

               Conread position:
               169-578
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               275
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               24, 53
               
Show alignments to all cow chromosomes.