Cow genome map

Conread name: Ss1.1-Mixc-0028p05.3

Conread position: 1-410
Cow position: chr22:12385320-12384908 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 267
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 38, 55

Conread position: 1-508
Cow position: chr22:12419017-12418505 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 472

Conread position: 1-522
Cow position: chr22:12432066-12431540 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 25

Conread position: 1-522
Cow position: chr22:12432150-12431624 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 104

Conread position: 1-534
Cow position: chr22:12399414-12398876 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 471

Conread position: 1-535
Cow position: chr22:46654191-46654730 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 342
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 11, 16

Conread position: 1-579
Cow position: chr22:12399666-12399083 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 218

Conread position: 1-581
Cow position: chr22:12432318-12431733 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 362
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 402

Conread position: 2-536
Cow position: chr22:12476128-12475587 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 468

Conread position: 2-540
Cow position: chr22:12499131-12499676 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 472

Conread position: 3-540
Cow position: chr22:12399330-12398786 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 35

Conread position: 12-530
Cow position: chr22:11640793-11641318 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 208

Conread position: 15-365
Cow position: chr22:11701293-11701646 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 230
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 112

Conread position: 15-414
Cow position: chr22:12458164-12457760 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 265
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 43, 124

Conread position: 15-420
Cow position: chr22:11641050-11641458 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 263
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 37, 125

Conread position: 15-522
Cow position: chr22:12458584-12458072 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 216

Conread position: 15-531
Cow position: chr22:14429505-14430023 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 308
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 36, 54

Conread position: 15-540
Cow position: chr22:12458332-12457802 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 293

Conread position: 15-563
Cow position: chr22:12419272-12418703 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 324
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 38, 286

Conread position: 15-579
Cow position: chr22:12476281-12475712 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 346

Conread position: 15-579
Cow position: chr22:12498978-12499547 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 346

Conread position: 18-319
Cow position: chr22:12399061-12398757 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 194
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 18-327
Cow position: chr22:12385219-12384907 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 18-528
Cow position: chr22:12431545-12431030 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 427

Conread position: 18-532
Cow position: chr22:12476194-12475675 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 454

Conread position: 18-532
Cow position: chr22:12498897-12499416 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 23-531
Cow position: chr22:12458409-12457895 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 201

Conread position: 23-532
Cow position: chr22:12476358-12475843 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 35-581
Cow position: chr22:12431860-12431313 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 339
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 81, 10

Conread position: 42-353
Cow position: chr22:12418805-12418494 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 201
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 155, 160

Conread position: 46-532
Cow position: chr22:12431346-12430858 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 396

Conread position: 46-578
Cow position: chr22:12399701-12399168 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 5

Conread position: 50-352
Cow position: chr22:12430922-12430620 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 197
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 50-486
Cow position: chr22:12418881-12418445 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 270
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 422, 416

Conread position: 51-531
Cow position: chr22:14468038-14468520 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 295
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 148, 169

Conread position: 51-582
Cow position: chr22:11640669-11641202 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 16

Conread position: 51-586
Cow position: chr22:11640753-11641291 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 417

Conread position: 52-245
Cow position: chr22:12475485-12475292 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 61, 50

Conread position: 52-245
Cow position: chr22:12499774-12499967 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 163, 168

Conread position: 52-481
Cow position: chr22:12458208-12457779 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 262
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 147, 170

Conread position: 52-528
Cow position: chr22:12431424-12430945 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 8

Conread position: 52-529
Cow position: chr22:12431088-12430609 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 151

Conread position: 52-530
Cow position: chr22:12431676-12431196 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 387

Conread position: 52-530
Cow position: chr22:14430046-14430526 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 298
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 160, 152

Conread position: 52-579
Cow position: chr22:12475905-12475376 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 170

Conread position: 52-579
Cow position: chr22:12475989-12475460 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 28

Conread position: 52-579
Cow position: chr22:12499354-12499883 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 168

Conread position: 55-578
Cow position: chr22:12419313-12418769 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 306
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 294, 540

Conread position: 56-567
Cow position: chr22:46654165-46654678 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 121

Conread position: 56-572
Cow position: chr22:46654333-46654850 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 432, 501

Conread position: 63-530
Cow position: chr22:14429721-14430190 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 296
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 373, 386

Conread position: 64-426
Cow position: chr22:14430562-14430924 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 220
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 51

Conread position: 64-534
Cow position: chr22:12385508-12385034 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 38

Conread position: 67-581
Cow position: chr22:12385674-12385155 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 141

Conread position: 68-579
Cow position: chr22:12432500-12431987 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 320
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 420, 480

Conread position: 72-440
Cow position: chr22:14468227-14468595 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 225
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 35

Conread position: 72-479
Cow position: chr22:12385330-12384923 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 400

Conread position: 72-485
Cow position: chr22:12430984-12430571 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 257
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 36, 47

Conread position: 72-500
Cow position: chr22:12475717-12475287 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 286

Conread position: 72-500
Cow position: chr22:12499542-12499972 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 389

Conread position: 72-522
Cow position: chr22:14430318-14430770 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 279
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 64, 52

Conread position: 72-530
Cow position: chr22:14467977-14468435 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 294
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 47, 15

Conread position: 72-531
Cow position: chr22:14429898-14430359 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 301
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 40, 30

Conread position: 72-532
Cow position: chr22:12431740-12431278 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 451

Conread position: 72-579
Cow position: chr22:46654097-46654606 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 325
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 30, 22

Conread position: 72-580
Cow position: chr22:12431908-12431398 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 370

Conread position: 73-450
Cow position: chr22:11666532-11666910 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 237
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 46

Conread position: 73-499
Cow position: chr22:11641027-11641455 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 204

Conread position: 73-522
Cow position: chr22:12431235-12430784 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 292

Conread position: 73-522
Cow position: chr22:12432411-12431960 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 371

Conread position: 73-530
Cow position: chr22:11701186-11701645 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 288
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 41, 46

Conread position: 73-531
Cow position: chr22:11640943-11641403 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 383

Conread position: 73-538
Cow position: chr22:12432327-12431860 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 297
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 127, 132

Conread position: 73-581
Cow position: chr22:12475800-12475290 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 376

Conread position: 73-582
Cow position: chr22:12399423-12398912 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 285

Conread position: 74-546
Cow position: chr22:12385412-12384938 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 284

Conread position: 74-579
Cow position: chr22:12399919-12399419 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 328
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 195, 8

Conread position: 74-581
Cow position: chr22:12499460-12499969 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 376

Conread position: 75-580
Cow position: chr22:46654017-46654523 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 326
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 114, 6

Conread position: 76-544
Cow position: chr22:14429650-14430120 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 293
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 117, 127

Conread position: 76-579
Cow position: chr22:12399756-12399251 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 297

Conread position: 76-581
Cow position: chr22:12499294-12499801 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 130

Conread position: 79-365
Cow position: chr22:11666622-11666908 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 187
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 58, 45

Conread position: 79-450
Cow position: chr22:11701276-11701648 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 236
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 58, 45

Conread position: 79-579
Cow position: chr22:12399837-12399335 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 125

Conread position: 81-522
Cow position: chr22:12498879-12499322 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 271

Conread position: 82-522
Cow position: chr22:12476379-12475937 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 20

Conread position: 82-581
Cow position: chr22:11701111-11701612 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 310
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 217, 210

Conread position: 82-583
Cow position: chr22:11640616-11641120 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 323
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 48, 55

Conread position: 88-522
Cow position: chr22:12458592-12458156 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 361

Conread position: 99-579
Cow position: chr22:46653956-46654438 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 302
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 339, 330

Conread position: 106-537
Cow position: chr22:12385718-12385283 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 279
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 54, 48

Conread position: 131-374
Cow position: chr22:12419321-12419078 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 161
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 134-532
Cow position: chr22:14467953-14468353 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 250
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 68, 85

Conread position: 135-519
Cow position: chr22:12498849-12499235 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 351, 0

Conread position: 135-530
Cow position: chr22:12476410-12476013 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 252
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 351, 0

Conread position: 135-581
Cow position: chr22:12399445-12398997 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 87

Conread position: 141-531
Cow position: chr22:12458623-12458231 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 308

Conread position: 190-557
Cow position: chr22:12385718-12385347 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 238
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 54, 48

Show alignments to all cow chromosomes.