Cow genome map

Conread name: Ss1.1-Mixc-0028p05.3

Conread position: 3-313
Cow position: chr23:24654127-24654441 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 279

Conread position: 15-320
Cow position: chr23:25660427-25660735 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 197
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 15-349
Cow position: chr23:24639744-24640081 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 228
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 0

Conread position: 15-532
Cow position: chr23:25660175-25660697 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 371

Conread position: 15-579
Cow position: chr23:24560698-24560129 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 454

Conread position: 18-412
Cow position: chr23:24535850-24535453 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 289

Conread position: 18-563
Cow position: chr23:24639243-24639792 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 68

Conread position: 18-578
Cow position: chr23:24560863-24560298 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 343

Conread position: 18-581
Cow position: chr23:24522790-24522225 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 351
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 43, 183

Conread position: 19-366
Cow position: chr23:24535765-24535414 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 232
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 204

Conread position: 39-318
Cow position: chr23:25723992-25723713 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 40-341
Cow position: chr23:24546942-24546641 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 194
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 42-402
Cow position: chr23:24547024-24546664 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 32

Conread position: 46-418
Cow position: chr23:25626590-25626960 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 244
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 5, 0

Conread position: 47-252
Cow position: chr23:24626535-24626738 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 21, 27

Conread position: 47-580
Cow position: chr23:25698597-25698063 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 155

Conread position: 49-486
Cow position: chr23:24547101-24546664 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 303

Conread position: 51-403
Cow position: chr23:24626371-24626723 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 302

Conread position: 52-246
Cow position: chr23:24560322-24560128 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 52-291
Cow position: chr23:24639868-24640107 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 153
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 52-309
Cow position: chr23:24522420-24522163 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 166
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 52-356
Cow position: chr23:25626763-25627069 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 193
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 275, 0

Conread position: 52-431
Cow position: chr23:24639700-24640079 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 301

Conread position: 52-537
Cow position: chr23:25626178-25626662 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 308
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 351, 356

Conread position: 52-579
Cow position: chr23:24547266-24546737 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 435, 514

Conread position: 52-579
Cow position: chr23:24560742-24560213 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 52-581
Cow position: chr23:24639532-24640063 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 71

Conread position: 52-589
Cow position: chr23:25626010-25626548 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 252

Conread position: 62-581
Cow position: chr23:24536053-24535534 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 5

Conread position: 69-581
Cow position: chr23:24547333-24546819 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 289

Conread position: 72-281
Cow position: chr23:24546826-24546617 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 180, 171

Conread position: 72-373
Cow position: chr23:24522484-24522182 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 288

Conread position: 72-420
Cow position: chr23:24654034-24654381 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 72-463
Cow position: chr23:25626699-25627091 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 250
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 344, 0

Conread position: 72-464
Cow position: chr23:24522568-24522175 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 251
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 138, 155

Conread position: 72-540
Cow position: chr23:24560890-24560420 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 159

Conread position: 72-579
Cow position: chr23:25698656-25698148 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 319
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 40, 45

Conread position: 72-581
Cow position: chr23:24639468-24639979 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 304

Conread position: 73-247
Cow position: chr23:25660572-25660746 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 129, 136

Conread position: 73-402
Cow position: chr23:25724042-25723713 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 73-580
Cow position: chr23:24547161-24546652 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 387

Conread position: 74-485
Cow position: chr23:24535874-24535464 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 8

Conread position: 75-546
Cow position: chr23:24639387-24639860 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 283

Conread position: 75-563
Cow position: chr23:25626453-25626939 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 72

Conread position: 76-556
Cow position: chr23:24522645-24522166 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 304
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 286, 40

Conread position: 79-347
Cow position: chr23:24626483-24626749 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 221, 225

Conread position: 79-379
Cow position: chr23:24521971-24521671 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 186
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 190, 243

Conread position: 81-581
Cow position: chr23:24639225-24639727 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 164

Conread position: 83-513
Cow position: chr23:24626319-24626749 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 356

Conread position: 84-581
Cow position: chr23:25625958-25626457 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 305
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 355, 365

Conread position: 85-533
Cow position: chr23:25660164-25660614 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 298

Conread position: 92-519
Cow position: chr23:25724107-25723681 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 346

Conread position: 113-579
Cow position: chr23:25698699-25698231 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 294
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 80, 90

Conread position: 126-540
Cow position: chr23:24626278-24626694 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 14

Conread position: 133-581
Cow position: chr23:24560913-24560463 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 287
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 355, 433

Conread position: 147-563
Cow position: chr23:24536054-24535637 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 273
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 65, 78

Conread position: 150-532
Cow position: chr23:25660145-25660529 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 208

Conread position: 166-501
Cow position: chr23:24654043-24654380 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 224
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 317, 0

Conread position: 167-531
Cow position: chr23:25724116-25723750 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 0

Conread position: 236-581
Cow position: chr23:25724131-25723784 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 225
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 248, 312

Conread position: 236-586
Cow position: chr23:24547334-24546981 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 208

Conread position: 317-579
Cow position: chr23:24654024-24654290 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 251

Conread position: 338-579
Cow position: chr23:25660165-25660408 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 140, 0

Show alignments to all cow chromosomes.