Cow genome map
Conread name: | Ss1.1-Mixc-0028p05.3 |
Conread position: | 3-313 |
Cow position: | chr23:24654127-24654441 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 202 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 18, 279 |
Conread position: | 15-320 |
Cow position: | chr23:25660427-25660735 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 197 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 15-349 |
Cow position: | chr23:24639744-24640081 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 228 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 15-532 |
Cow position: | chr23:25660175-25660697 (view UCSC Genome Browser custom track) |
Alignm length: | 524 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 371 |
Conread position: | 15-579 |
Cow position: | chr23:24560698-24560129 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 454 |
Conread position: | 18-412 |
Cow position: | chr23:24535850-24535453 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 289 |
Conread position: | 18-563 |
Cow position: | chr23:24639243-24639792 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 68 |
Conread position: | 18-578 |
Cow position: | chr23:24560863-24560298 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 343 |
Conread position: | 18-581 |
Cow position: | chr23:24522790-24522225 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 351 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 43, 183 |
Conread position: | 19-366 |
Cow position: | chr23:24535765-24535414 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 232 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 33, 204 |
Conread position: | 39-318 |
Cow position: | chr23:25723992-25723713 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 187 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 40-341 |
Cow position: | chr23:24546942-24546641 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 194 |
Alignm E-value: | 9e-32 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 42-402 |
Cow position: | chr23:24547024-24546664 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 32 |
Conread position: | 46-418 |
Cow position: | chr23:25626590-25626960 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 244 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 47-252 |
Cow position: | chr23:24626535-24626738 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 146 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 21, 27 |
Conread position: | 47-580 |
Cow position: | chr23:25698597-25698063 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 155 |
Conread position: | 49-486 |
Cow position: | chr23:24547101-24546664 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 313, 303 |
Conread position: | 51-403 |
Cow position: | chr23:24626371-24626723 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 310, 302 |
Conread position: | 52-246 |
Cow position: | chr23:24560322-24560128 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 132 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 52-291 |
Cow position: | chr23:24639868-24640107 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 153 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 52-309 |
Cow position: | chr23:24522420-24522163 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 166 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 52-356 |
Cow position: | chr23:25626763-25627069 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 193 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 275, 0 |
Conread position: | 52-431 |
Cow position: | chr23:24639700-24640079 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 310, 301 |
Conread position: | 52-537 |
Cow position: | chr23:25626178-25626662 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 308 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 351, 356 |
Conread position: | 52-579 |
Cow position: | chr23:24547266-24546737 (view UCSC Genome Browser custom track) |
Alignm length: | 531 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 435, 514 |
Conread position: | 52-579 |
Cow position: | chr23:24560742-24560213 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 21 |
Conread position: | 52-581 |
Cow position: | chr23:24639532-24640063 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 71 |
Conread position: | 52-589 |
Cow position: | chr23:25626010-25626548 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 247, 252 |
Conread position: | 62-581 |
Cow position: | chr23:24536053-24535534 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 5 |
Conread position: | 69-581 |
Cow position: | chr23:24547333-24546819 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 293, 289 |
Conread position: | 72-281 |
Cow position: | chr23:24546826-24546617 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 143 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 180, 171 |
Conread position: | 72-373 |
Cow position: | chr23:24522484-24522182 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 288 |
Conread position: | 72-420 |
Cow position: | chr23:24654034-24654381 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 0 |
Conread position: | 72-463 |
Cow position: | chr23:25626699-25627091 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 250 |
Alignm E-value: | 8.00001e-41 |
Alignm gaps (pig, cow): | 344, 0 |
Conread position: | 72-464 |
Cow position: | chr23:24522568-24522175 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 251 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 138, 155 |
Conread position: | 72-540 |
Cow position: | chr23:24560890-24560420 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 159 |
Conread position: | 72-579 |
Cow position: | chr23:25698656-25698148 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 319 |
Alignm E-value: | 7e-40 |
Alignm gaps (pig, cow): | 40, 45 |
Conread position: | 72-581 |
Cow position: | chr23:24639468-24639979 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 317, 304 |
Conread position: | 73-247 |
Cow position: | chr23:25660572-25660746 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 122 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 129, 136 |
Conread position: | 73-402 |
Cow position: | chr23:25724042-25723713 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 219 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 73-580 |
Cow position: | chr23:24547161-24546652 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 400, 387 |
Conread position: | 74-485 |
Cow position: | chr23:24535874-24535464 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 371, 8 |
Conread position: | 75-546 |
Cow position: | chr23:24639387-24639860 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 283 |
Conread position: | 75-563 |
Cow position: | chr23:25626453-25626939 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 72 |
Conread position: | 76-556 |
Cow position: | chr23:24522645-24522166 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 304 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 286, 40 |
Conread position: | 79-347 |
Cow position: | chr23:24626483-24626749 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 183 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 221, 225 |
Conread position: | 79-379 |
Cow position: | chr23:24521971-24521671 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 186 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 190, 243 |
Conread position: | 81-581 |
Cow position: | chr23:24639225-24639727 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 164 |
Conread position: | 83-513 |
Cow position: | chr23:24626319-24626749 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 362, 356 |
Conread position: | 84-581 |
Cow position: | chr23:25625958-25626457 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 305 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 355, 365 |
Conread position: | 85-533 |
Cow position: | chr23:25660164-25660614 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 304, 298 |
Conread position: | 92-519 |
Cow position: | chr23:25724107-25723681 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 330, 346 |
Conread position: | 113-579 |
Cow position: | chr23:25698699-25698231 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 294 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 80, 90 |
Conread position: | 126-540 |
Cow position: | chr23:24626278-24626694 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 14 |
Conread position: | 133-581 |
Cow position: | chr23:24560913-24560463 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 287 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 355, 433 |
Conread position: | 147-563 |
Cow position: | chr23:24536054-24535637 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 273 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 65, 78 |
Conread position: | 150-532 |
Cow position: | chr23:25660145-25660529 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 208 |
Conread position: | 166-501 |
Cow position: | chr23:24654043-24654380 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 224 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 317, 0 |
Conread position: | 167-531 |
Cow position: | chr23:25724116-25723750 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 319, 0 |
Conread position: | 236-581 |
Cow position: | chr23:25724131-25723784 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 225 |
Alignm E-value: | 4e-35 |
Alignm gaps (pig, cow): | 248, 312 |
Conread position: | 236-586 |
Cow position: | chr23:24547334-24546981 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 200, 208 |
Conread position: | 317-579 |
Cow position: | chr23:24654024-24654290 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 179 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 12, 251 |
Conread position: | 338-579 |
Cow position: | chr23:25660165-25660408 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 165 |
Alignm E-value: | 8e-30 |
Alignm gaps (pig, cow): | 140, 0 |
Show alignments to all cow chromosomes.