Cow genome map

Conread name: Ss1.1-Mixc-0028p05.3

Conread position: 1-245
Cow position:
Alignm length: 248
Alignm identity: 158
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 1-247
Cow position:
Alignm length: 251
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 204

Conread position: 1-335
Cow position:
Alignm length: 341
Alignm identity: 214
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 58, 208

Conread position: 1-493
Cow position:
Alignm length: 499
Alignm identity: 303
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 60, 207

Conread position: 1-581
Cow position:
Alignm length: 586
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 1-586
Cow position:
Alignm length: 593
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 229

Conread position: 6-485
Cow position:
Alignm length: 483
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 8-317
Cow position:
Alignm length: 316
Alignm identity: 207
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 13, 178

Conread position: 9-444
Cow position:
Alignm length: 442
Alignm identity: 274
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 43, 109

Conread position: 10-586
Cow position:
Alignm length: 580
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 243

Conread position: 11-584
Cow position:
Alignm length: 583
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 352

Conread position: 15-375
Cow position:
Alignm length: 368
Alignm identity: 241
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 28, 19

Conread position: 15-414
Cow position:
Alignm length: 403
Alignm identity: 259
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 25, 0

Conread position: 15-557
Cow position:
Alignm length: 547
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 273

Conread position: 15-567
Cow position:
Alignm length: 560
Alignm identity: 340
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 36, 140

Conread position: 15-581
Cow position:
Alignm length: 574
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 204

Conread position: 16-576
Cow position:
Alignm length: 570
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 20

Conread position: 18-329
Cow position:
Alignm length: 315
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 18-363
Cow position:
Alignm length: 350
Alignm identity: 220
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 277

Conread position: 18-586
Cow position:
Alignm length: 578
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 52

Conread position: 19-486
Cow position:
Alignm length: 472
Alignm identity: 289
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 33, 112

Conread position: 19-567
Cow position:
Alignm length: 559
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 20-567
Cow position:
Alignm length: 555
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 287

Conread position: 22-581
Cow position:
Alignm length: 568
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 113

Conread position: 39-364
Cow position:
Alignm length: 327
Alignm identity: 209
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 136, 142

Conread position: 40-529
Cow position:
Alignm length: 492
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 447, 0

Conread position: 40-581
Cow position:
Alignm length: 549
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 423

Conread position: 41-414
Cow position:
Alignm length: 375
Alignm identity: 240
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 335, 348

Conread position: 41-581
Cow position:
Alignm length: 544
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 411

Conread position: 41-581
Cow position:
Alignm length: 545
Alignm identity: 339
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 82, 77

Conread position: 41-586
Cow position:
Alignm length: 550
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 524

Conread position: 42-417
Cow position:
Alignm length: 376
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 42-558
Cow position:
Alignm length: 520
Alignm identity: 317
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 430, 418

Conread position: 42-566
Cow position:
Alignm length: 529
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 235

Conread position: 42-567
Cow position:
Alignm length: 532
Alignm identity: 327
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 347, 334

Conread position: 42-579
Cow position:
Alignm length: 543
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 180

Conread position: 42-583
Cow position:
Alignm length: 546
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 438, 343

Conread position: 43-446
Cow position:
Alignm length: 408
Alignm identity: 260
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 6

Conread position: 45-545
Cow position:
Alignm length: 502
Alignm identity: 305
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 29

Conread position: 46-297
Cow position:
Alignm length: 253
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 147, 173

Conread position: 46-389
Cow position:
Alignm length: 346
Alignm identity: 231
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 166, 5

Conread position: 46-531
Cow position:
Alignm length: 490
Alignm identity: 304
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 39

Conread position: 48-563
Cow position:
Alignm length: 518
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 441, 513

Conread position: 49-487
Cow position:
Alignm length: 440
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 340

Conread position: 49-529
Cow position:
Alignm length: 484
Alignm identity: 300
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 172, 167

Conread position: 50-586
Cow position:
Alignm length: 542
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 137

Conread position: 51-318
Cow position:
Alignm length: 270
Alignm identity: 178
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 40, 46

Conread position: 51-583
Cow position:
Alignm length: 537
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 434, 515

Conread position: 52-529
Cow position:
Alignm length: 482
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 168

Conread position: 52-567
Cow position:
Alignm length: 519
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 229

Conread position: 52-569
Cow position:
Alignm length: 522
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 397

Conread position: 52-583
Cow position:
Alignm length: 542
Alignm identity: 327
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 61, 71

Conread position: 54-366
Cow position:
Alignm length: 315
Alignm identity: 208
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 20, 13

Conread position: 55-546
Cow position:
Alignm length: 496
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 11

Conread position: 55-581
Cow position:
Alignm length: 530
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 387

Conread position: 56-486
Cow position:
Alignm length: 433
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 146

Conread position: 63-582
Cow position:
Alignm length: 525
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 39

Conread position: 64-523
Cow position:
Alignm length: 461
Alignm identity: 290
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 446, 436

Conread position: 64-578
Cow position:
Alignm length: 524
Alignm identity: 326
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 150, 35

Conread position: 67-581
Cow position:
Alignm length: 518
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 319

Conread position: 68-549
Cow position:
Alignm length: 485
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 29

Conread position: 69-579
Cow position:
Alignm length: 514
Alignm identity: 313
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 403, 121

Conread position: 69-581
Cow position:
Alignm length: 518
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 54

Conread position: 69-583
Cow position:
Alignm length: 519
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 289

Conread position: 72-395
Cow position:
Alignm length: 325
Alignm identity: 217
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 187, 193

Conread position: 72-412
Cow position:
Alignm length: 343
Alignm identity: 213
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 226, 232

Conread position: 72-485
Cow position:
Alignm length: 417
Alignm identity: 267
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 145, 128

Conread position: 72-493
Cow position:
Alignm length: 422
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 72-494
Cow position:
Alignm length: 424
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 280

Conread position: 72-523
Cow position:
Alignm length: 467
Alignm identity: 298
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 103, 217

Conread position: 72-529
Cow position:
Alignm length: 464
Alignm identity: 283
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 5, 52

Conread position: 72-575
Cow position:
Alignm length: 505
Alignm identity: 310
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 317, 82

Conread position: 72-579
Cow position:
Alignm length: 512
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 31

Conread position: 73-357
Cow position:
Alignm length: 288
Alignm identity: 186
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 70, 77

Conread position: 73-466
Cow position:
Alignm length: 394
Alignm identity: 238
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 73-530
Cow position:
Alignm length: 461
Alignm identity: 278
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 400, 387

Conread position: 73-549
Cow position:
Alignm length: 479
Alignm identity: 299
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 275, 203

Conread position: 74-257
Cow position:
Alignm length: 184
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 74-532
Cow position:
Alignm length: 461
Alignm identity: 278
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 409, 0

Conread position: 75-273
Cow position:
Alignm length: 199
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 7, 0

Conread position: 76-524
Cow position:
Alignm length: 452
Alignm identity: 274
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 379, 48

Conread position: 76-581
Cow position:
Alignm length: 509
Alignm identity: 315
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 409, 485

Conread position: 82-531
Cow position:
Alignm length: 453
Alignm identity: 274
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 186, 194

Conread position: 82-581
Cow position:
Alignm length: 503
Alignm identity: 314
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 404, 176

Conread position: 82-583
Cow position:
Alignm length: 507
Alignm identity: 311
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 78, 71

Conread position: 87-576
Cow position:
Alignm length: 494
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 396, 424

Conread position: 93-415
Cow position:
Alignm length: 325
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 6, 107

Conread position: 93-534
Cow position:
Alignm length: 448
Alignm identity: 273
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 100, 111

Conread position: 93-579
Cow position:
Alignm length: 492
Alignm identity: 310
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 207, 211

Conread position: 97-451
Cow position:
Alignm length: 355
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 97-522
Cow position:
Alignm length: 430
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 126

Conread position: 100-581
Cow position:
Alignm length: 486
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 51

Conread position: 106-581
Cow position:
Alignm length: 479
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 459

Conread position: 122-581
Cow position:
Alignm length: 468
Alignm identity: 294
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 93, 113

Conread position: 130-579
Cow position:
Alignm length: 455
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 228

Conread position: 136-581
Cow position:
Alignm length: 450
Alignm identity: 278
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 348, 17

Conread position: 147-579
Cow position:
Alignm length: 438
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 53

Conread position: 150-519
Cow position:
Alignm length: 375
Alignm identity: 236
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 150, 155

Conread position: 151-425
Cow position:
Alignm length: 275
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 156-485
Cow position:
Alignm length: 330
Alignm identity: 215
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 156-491
Cow position:
Alignm length: 340
Alignm identity: 216
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 133, 146

Conread position: 157-346
Cow position:
Alignm length: 190
Alignm identity: 132
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 158-362
Cow position:
Alignm length: 206
Alignm identity: 141
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 39, 44

Conread position: 158-497
Cow position:
Alignm length: 344
Alignm identity: 230
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 25, 18

Conread position: 166-341
Cow position:
Alignm length: 176
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 167-508
Cow position:
Alignm length: 346
Alignm identity: 218
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 222, 212

Conread position: 194-581
Cow position:
Alignm length: 392
Alignm identity: 255
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 195, 190

Conread position: 210-581
Cow position:
Alignm length: 377
Alignm identity: 236
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 277, 343

Conread position: 232-523
Cow position:
Alignm length: 296
Alignm identity: 187
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 157, 144

Conread position: 236-536
Cow position:
Alignm length: 304
Alignm identity: 191
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 191, 208

Conread position: 241-417
Cow position:
Alignm length: 177
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 241-581
Cow position:
Alignm length: 346
Alignm identity: 222
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 148, 138

Conread position: 262-577
Cow position:
Alignm length: 321
Alignm identity: 203
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 195, 282

Conread position: 296-579
Cow position:
Alignm length: 287
Alignm identity: 181
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 164, 110

Show alignments to all cow chromosomes.