Cow genome map
| Conread name: | Ss1.1-Mixc-0028p05.3 |
| Conread position: | 1-362 |
| Cow position: | chr28:9299314-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 264 |
| Conread position: | 1-499 |
| Cow position: | chr28:34696089-34696590 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 219 |
| Conread position: | 1-502 |
| Cow position: | chr28:11334044-11333538 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 1-536 |
| Cow position: | chr28:7810357-7810888 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 3-430 |
| Cow position: | chr28:11333790-11333366 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 15-521 |
| Cow position: | chr28:11333862-11333357 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 37, 90 |
| Conread position: | 15-579 |
| Cow position: | chr28:7757523-7758092 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 18-486 |
| Cow position: | chr28:9253129-9253600 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 454 |
| Conread position: | 18-581 |
| Cow position: | chr28:7757694-7758262 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 201 |
| Conread position: | 18-583 |
| Cow position: | chr28:9298593-9299159 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 74 |
| Conread position: | 40-546 |
| Cow position: | chr28:7810315-7810814 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 45-581 |
| Cow position: | chr28:34695968-34696506 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 172 |
| Conread position: | 46-557 |
| Cow position: | chr28:34696053-34696566 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 46-589 |
| Cow position: | chr28:9253077-9253621 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 438, 5 |
| Conread position: | 47-598 |
| Cow position: | chr28:34695886-34696437 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 520 |
| Conread position: | 48-403 |
| Cow position: | chr28:7757979-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 49-417 |
| Cow position: | chr28:9290312-9290678 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 238, 63 |
| Conread position: | 50-448 |
| Cow position: | chr28:7758469-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 219, 227 |
| Conread position: | 50-581 |
| Cow position: | chr28:9290149-9290676 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 52-418 |
| Cow position: | chr28:33210291-33210658 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 270, 334 |
| Conread position: | 52-426 |
| Cow position: | chr28:7810570-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-454 |
| Cow position: | chr28:7757899-7758301 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 264 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 140, 152 |
| Conread position: | 52-517 |
| Cow position: | chr28:7758387-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 293 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 410, 383 |
| Conread position: | 52-532 |
| Cow position: | chr28:9252913-9253396 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 55-344 |
| Cow position: | chr28:9290401-9290689 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 55-552 |
| Cow position: | chr28:7757398-7757898 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 118 |
| Conread position: | 56-518 |
| Cow position: | chr28:11334154-11333690 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 137, 168 |
| Conread position: | 60-562 |
| Cow position: | chr28:9253006-9253509 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 501 |
| Conread position: | 69-345 |
| Cow position: | chr28:7810671-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 133, 138 |
| Conread position: | 72-502 |
| Cow position: | chr28:7758323-7758755 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 138, 150 |
| Conread position: | 72-571 |
| Cow position: | chr28:7757501-7758000 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 9 |
| Conread position: | 73-313 |
| Cow position: | chr28:34673691-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-458 |
| Cow position: | chr28:33210228-33210614 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 0 |
| Conread position: | 75-415 |
| Cow position: | chr28:9299224-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 76-537 |
| Cow position: | chr28:34673442-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 38, 50 |
| Conread position: | 76-581 |
| Cow position: | chr28:9290091-9290592 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 116 |
| Conread position: | 82-508 |
| Cow position: | chr28:34673364-34673792 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 384, 0 |
| Conread position: | 84-523 |
| Cow position: | chr28:34679549-34679116 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 85-558 |
| Cow position: | chr28:34695840-34696315 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 0 |
| Conread position: | 86-533 |
| Cow position: | chr28:7757345-7757794 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 294 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 92-581 |
| Cow position: | chr28:7810283-7810765 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 245 |
| Conread position: | 126-508 |
| Cow position: | chr28:7810560-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 242, 248 |
| Conread position: | 141-522 |
| Cow position: | chr28:9289985-9290367 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 218 |
| Conread position: | 141-563 |
| Cow position: | chr28:11334153-11333730 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 164, 158 |
| Conread position: | 141-581 |
| Cow position: | chr28:34695728-34696170 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 71, 76 |
| Conread position: | 141-581 |
| Cow position: | chr28:34695812-34696254 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 116, 112 |
| Conread position: | 153-497 |
| Cow position: | chr28:9299217-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 317, 303 |
| Conread position: | 153-581 |
| Cow position: | chr28:33210223-33210655 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 314 |
| Conread position: | 166-578 |
| Cow position: | chr28:11334212-11333796 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 239-508 |
| Cow position: | chr28:34673353-34673624 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 58 |
Show alignments to all cow chromosomes.