Cow genome map
| Conread name: | Ss1.1-Mixc-0028p05.3 |
| Conread position: | 3-492 |
| Cow position: | chr3:68045862-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 218 |
| Conread position: | 15-330 |
| Cow position: | chr3:62743115-62743433 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 71 |
| Conread position: | 18-581 |
| Cow position: | chr3:62722215-62721647 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 207 |
| Conread position: | 22-546 |
| Cow position: | chr3:62722128-62721598 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 257 |
| Conread position: | 35-318 |
| Cow position: | chr3:68027475-68027757 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 51-498 |
| Cow position: | chr3:68027322-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 51-584 |
| Cow position: | chr3:68045831-68046365 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 52-320 |
| Cow position: | chr3:62721842-62721574 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-498 |
| Cow position: | chr3:62742593-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 48 |
| Conread position: | 52-538 |
| Cow position: | chr3:62742425-62742909 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 150, 156 |
| Conread position: | 52-579 |
| Cow position: | chr3:68045748-68046277 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 73, 85 |
| Conread position: | 64-551 |
| Cow position: | chr3:62742270-62742757 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 236, 84 |
| Conread position: | 67-356 |
| Cow position: | chr3:68027003-68027291 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 72-395 |
| Cow position: | chr3:77350913-77350593 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 72-411 |
| Cow position: | chr3:62721906-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 72-522 |
| Cow position: | chr3:68027091-68027543 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 148 |
| Conread position: | 72-579 |
| Cow position: | chr3:77351240-77350740 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 317, 59 |
| Conread position: | 72-581 |
| Cow position: | chr3:62722242-62721731 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 232 |
| Conread position: | 72-582 |
| Cow position: | chr3:62742361-62742868 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 144, 155 |
| Conread position: | 73-447 |
| Cow position: | chr3:20194890-20195264 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-531 |
| Cow position: | chr3:68027260-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 73-531 |
| Cow position: | chr3:68045685-68046145 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 139, 147 |
| Conread position: | 74-568 |
| Cow position: | chr3:68045603-68046098 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 8 |
| Conread position: | 76-579 |
| Cow position: | chr3:62722322-62721817 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 93-454 |
| Cow position: | chr3:62743033-62743389 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 353, 85 |
| Conread position: | 100-579 |
| Cow position: | chr3:62722381-62721901 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 8 |
| Conread position: | 142-497 |
| Cow position: | chr3:77350927-77350575 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 204-522 |
| Cow position: | chr3:68027057-68027375 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 204-532 |
| Cow position: | chr3:62742241-62742571 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 114 |
Show alignments to all cow chromosomes.