Cow genome map
| Conread name: | Ss1.1-Mixc-0028p05.3 |
| Conread position: | 1-529 |
| Cow position: | chr6:49362108-49362629 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 18-412 |
| Cow position: | chr6:49362449-49362834 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 31, 162 |
| Conread position: | 43-412 |
| Cow position: | chr6:49429119-49429491 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 48-581 |
| Cow position: | chr6:49396022-49396551 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 128 |
| Conread position: | 49-426 |
| Cow position: | chr6:49341052-49341429 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 173 |
| Conread position: | 50-542 |
| Cow position: | chr6:49340633-49341127 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 52-523 |
| Cow position: | chr6:49396524-49396997 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 52-531 |
| Cow position: | chr6:49340971-49341451 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 252 |
| Conread position: | 52-532 |
| Cow position: | chr6:49396272-49396754 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 165 |
| Conread position: | 52-541 |
| Cow position: | chr6:49340467-49340958 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 416 |
| Conread position: | 52-541 |
| Cow position: | chr6:49340887-49341378 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 237 |
| Conread position: | 52-579 |
| Cow position: | chr6:49340551-49341080 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 163 |
| Conread position: | 52-579 |
| Cow position: | chr6:49340719-49341248 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 167 |
| Conread position: | 52-579 |
| Cow position: | chr6:49396356-49396885 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 165 |
| Conread position: | 55-540 |
| Cow position: | chr6:49396113-49396594 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 64-579 |
| Cow position: | chr6:49395872-49396381 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 418, 14 |
| Conread position: | 72-579 |
| Cow position: | chr6:49340403-49340912 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 181 |
| Conread position: | 73-532 |
| Cow position: | chr6:49362339-49362788 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 324, 292 |
| Conread position: | 73-562 |
| Cow position: | chr6:49428900-49429390 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 300 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 405, 471 |
| Conread position: | 97-540 |
| Cow position: | chr6:49396233-49396678 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 117-581 |
| Cow position: | chr6:49340364-49340830 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 297 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 224, 220 |
| Conread position: | 146-546 |
| Cow position: | chr6:49362328-49362718 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 255-581 |
| Cow position: | chr6:49428242-49428570 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 178, 172 |
Show alignments to all cow chromosomes.