Cow genome map


           Conread name:
           Ss1.1-Mixc-0028p05.3
        

               Conread position:
               3-522
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               329
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               18, 125
               

               Conread position:
               15-500
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 368
               

               Conread position:
               15-532
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               317
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               15-579
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 206
               

               Conread position:
               18-362
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               33, 52
               

               Conread position:
               18-522
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 192
               

               Conread position:
               18-579
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 429
               

               Conread position:
               40-582
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 162
               

               Conread position:
               41-587
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 242
               

               Conread position:
               46-546
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               440, 5
               

               Conread position:
               46-579
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               437, 5
               

               Conread position:
               47-362
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               311, 0
               

               Conread position:
               47-518
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               288
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               17, 246
               

               Conread position:
               48-581
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 73
               

               Conread position:
               49-401
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 309
               

               Conread position:
               49-431
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               27, 34
               

               Conread position:
               49-523
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 158
               

               Conread position:
               51-557
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               434, 0
               

               Conread position:
               51-579
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 134
               

               Conread position:
               52-403
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               52-481
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               52-522
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               307
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               70, 78
               

               Conread position:
               52-532
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               304
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               145, 168
               

               Conread position:
               52-581
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               324
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               157, 166
               

               Conread position:
               52-581
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               323
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               154, 163
               

               Conread position:
               52-583
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 151
               

               Conread position:
               52-586
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               328, 314
               

               Conread position:
               57-502
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               431, 0
               

               Conread position:
               64-407
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               339, 0
               

               Conread position:
               64-532
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 15
               

               Conread position:
               64-579
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               319
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               396, 502
               

               Conread position:
               69-366
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               66, 50
               

               Conread position:
               69-532
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               285
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               52, 38
               

               Conread position:
               69-581
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               93, 104
               

               Conread position:
               70-532
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               281
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               52, 66
               

               Conread position:
               71-522
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               286
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               139, 146
               

               Conread position:
               72-508
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               272
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               55, 45
               

               Conread position:
               72-529
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 146
               

               Conread position:
               72-530
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               289
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               365, 377
               

               Conread position:
               72-532
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               293
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               77, 41
               

               Conread position:
               72-532
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               289
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               50, 64
               

               Conread position:
               72-555
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 57
               

               Conread position:
               72-581
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               312
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               144, 46
               

               Conread position:
               72-585
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               321
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               134, 116
               

               Conread position:
               73-473
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               267
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               147, 143
               

               Conread position:
               73-530
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               283
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               289, 285
               

               Conread position:
               73-530
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               302
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               50, 34
               

               Conread position:
               74-586
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               409, 454
               

               Conread position:
               75-533
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               277
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               69, 7
               

               Conread position:
               76-522
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               277
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               39, 51
               

               Conread position:
               79-522
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               281
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               138, 124
               

               Conread position:
               82-522
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               206, 107
               

               Conread position:
               82-583
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 138
               

               Conread position:
               88-581
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               297
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               375, 395
               

               Conread position:
               94-538
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               27, 38
               

               Conread position:
               101-499
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               111, 121
               

               Conread position:
               108-522
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               272
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               17, 172
               

               Conread position:
               131-579
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               287
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               169, 173
               

               Conread position:
               141-578
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               286
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               52, 62
               

               Conread position:
               153-586
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               269
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               56, 49
               
Show alignments to all cow chromosomes.