Cow genome map
| Conread name: | Ss1.1-Mixc-0028p05.3 |
| Conread position: | 3-522 |
| Cow position: | chr7:1439734-1440257 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 329 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 18, 125 |
| Conread position: | 15-500 |
| Cow position: | chr7:1014962-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 368 |
| Conread position: | 15-532 |
| Cow position: | chr7:28846446-28846968 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 15-579 |
| Cow position: | chr7:1014710-1015279 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 206 |
| Conread position: | 18-362 |
| Cow position: | chr7:1439917-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 18-522 |
| Cow position: | chr7:42878830-42878321 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 192 |
| Conread position: | 18-579 |
| Cow position: | chr7:42879166-42878600 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 429 |
| Conread position: | 40-582 |
| Cow position: | chr7:3180252-3180796 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 162 |
| Conread position: | 41-587 |
| Cow position: | chr7:42878972-42878423 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 242 |
| Conread position: | 46-546 |
| Cow position: | chr7:11601129-11600628 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 5 |
| Conread position: | 46-579 |
| Cow position: | chr7:3179839-3180373 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 5 |
| Conread position: | 47-362 |
| Cow position: | chr7:18390472-18390786 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 311, 0 |
| Conread position: | 47-518 |
| Cow position: | chr7:8277400-8277875 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 17, 246 |
| Conread position: | 48-581 |
| Cow position: | chr7:18390137-18390672 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 49-401 |
| Cow position: | chr7:42878628-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 309 |
| Conread position: | 49-431 |
| Cow position: | chr7:1438309-1438691 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 49-523 |
| Cow position: | chr7:42878880-42878404 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 158 |
| Conread position: | 51-557 |
| Cow position: | chr7:18390224-18390732 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 0 |
| Conread position: | 51-579 |
| Cow position: | chr7:3180095-3180625 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 134 |
| Conread position: | 52-403 |
| Cow position: | chr7:18390393-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-481 |
| Cow position: | chr7:42878709-42878280 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-522 |
| Cow position: | chr7:8325216-8325688 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 307 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 70, 78 |
| Conread position: | 52-532 |
| Cow position: | chr7:8325132-8325614 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 304 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 145, 168 |
| Conread position: | 52-581 |
| Cow position: | chr7:1014336-1014861 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 157, 166 |
| Conread position: | 52-581 |
| Cow position: | chr7:18389973-18390504 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 154, 163 |
| Conread position: | 52-583 |
| Cow position: | chr7:3180012-3180546 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 151 |
| Conread position: | 52-586 |
| Cow position: | chr7:3179760-3180297 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 314 |
| Conread position: | 57-502 |
| Cow position: | chr7:18390314-18390761 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 0 |
| Conread position: | 64-407 |
| Cow position: | chr7:11600776-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 339, 0 |
| Conread position: | 64-532 |
| Cow position: | chr7:42879283-42878815 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 64-579 |
| Cow position: | chr7:11601196-11600679 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 319 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 396, 502 |
| Conread position: | 69-366 |
| Cow position: | chr7:8325821-8326118 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 69-532 |
| Cow position: | chr7:8242879-8243344 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 285 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 69-581 |
| Cow position: | chr7:1014269-1014777 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 93, 104 |
| Conread position: | 70-532 |
| Cow position: | chr7:8243635-8244096 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 71-522 |
| Cow position: | chr7:8324815-8325268 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 139, 146 |
| Conread position: | 72-508 |
| Cow position: | chr7:8277931-8278369 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 72-529 |
| Cow position: | chr7:3180368-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 146 |
| Conread position: | 72-530 |
| Cow position: | chr7:11600936-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 365, 377 |
| Conread position: | 72-532 |
| Cow position: | chr7:8277259-8277721 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 72-532 |
| Cow position: | chr7:8325068-8325530 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 72-555 |
| Cow position: | chr7:1014938-1015423 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 72-581 |
| Cow position: | chr7:11601271-11600761 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 144, 46 |
| Conread position: | 72-585 |
| Cow position: | chr7:8325572-8326087 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 321 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 134, 116 |
| Conread position: | 73-473 |
| Cow position: | chr7:11600851-11600449 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 267 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 147, 143 |
| Conread position: | 73-530 |
| Cow position: | chr7:8325489-8325948 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 283 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 289, 285 |
| Conread position: | 73-530 |
| Cow position: | chr7:8325657-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 302 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 74-586 |
| Cow position: | chr7:42879191-42878676 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 454 |
| Conread position: | 75-533 |
| Cow position: | chr7:8242970-8243428 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 7 |
| Conread position: | 76-522 |
| Cow position: | chr7:8277599-8278047 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 79-522 |
| Cow position: | chr7:8277854-8278299 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 138, 124 |
| Conread position: | 82-522 |
| Cow position: | chr7:1439479-1439922 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 206, 107 |
| Conread position: | 82-583 |
| Cow position: | chr7:3179706-3180210 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 138 |
| Conread position: | 88-581 |
| Cow position: | chr7:28846438-28846933 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 375, 395 |
| Conread position: | 94-538 |
| Cow position: | chr7:28846612-28847058 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 101-499 |
| Cow position: | chr7:1014217-1014617 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 111, 121 |
| Conread position: | 108-522 |
| Cow position: | chr7:1439417-1439839 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 17, 172 |
| Conread position: | 131-579 |
| Cow position: | chr7:3179671-3180121 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 287 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 169, 173 |
| Conread position: | 141-578 |
| Cow position: | chr7:1014671-1015110 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 153-586 |
| Cow position: | chr7:8324729-8325165 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 56, 49 |
Show alignments to all cow chromosomes.