Cow genome map
| Conread name: | Ss1.1-Mixc-0028p05.3 |
| Conread position: | 1-476 |
| Cow position: | chr8:46816894-46817372 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 455 |
| Conread position: | 8-583 |
| Cow position: | chr8:48407616-48407033 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 355 |
| Conread position: | 15-246 |
| Cow position: | chr8:48406515-48406281 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 72 |
| Conread position: | 18-535 |
| Cow position: | chr8:48407016-48406494 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 112 |
| Conread position: | 19-394 |
| Cow position: | chr8:46816996-46817374 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 23-494 |
| Cow position: | chr8:48407264-48406789 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 49-530 |
| Cow position: | chr8:46816021-46816504 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 157 |
| Conread position: | 49-530 |
| Cow position: | chr8:46816609-46817092 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 169 |
| Conread position: | 49-531 |
| Cow position: | chr8:45201162-45201646 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 309 |
| Conread position: | 49-578 |
| Cow position: | chr8:46816357-46816890 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 157 |
| Conread position: | 49-581 |
| Cow position: | chr8:46816105-46816639 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 169 |
| Conread position: | 49-583 |
| Cow position: | chr8:46816525-46817062 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 288 |
| Conread position: | 50-579 |
| Cow position: | chr8:46816274-46816805 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 308 |
| Conread position: | 51-571 |
| Cow position: | chr8:48406812-48406290 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 52-305 |
| Cow position: | chr8:45201753-45202006 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 219, 235 |
| Conread position: | 52-328 |
| Cow position: | chr8:45201669-45201944 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 52-519 |
| Cow position: | chr8:45201333-45201802 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 0 |
| Conread position: | 52-528 |
| Cow position: | chr8:46816864-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 97 |
| Conread position: | 52-535 |
| Cow position: | chr8:48407399-48406914 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 319 |
| Conread position: | 52-536 |
| Cow position: | chr8:45201417-45201903 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 52-558 |
| Cow position: | chr8:55581221-55581729 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 52-567 |
| Cow position: | chr8:48407063-48406546 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 170 |
| Conread position: | 56-519 |
| Cow position: | chr8:45201085-45201550 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 56-536 |
| Cow position: | chr8:48407647-48407165 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 428, 0 |
| Conread position: | 63-579 |
| Cow position: | chr8:55580727-55581246 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 405 |
| Conread position: | 64-579 |
| Cow position: | chr8:45201261-45201778 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 294 |
| Conread position: | 69-568 |
| Cow position: | chr8:46816797-46817298 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 137 |
| Conread position: | 72-519 |
| Cow position: | chr8:55581157-55581606 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 0 |
| Conread position: | 72-529 |
| Cow position: | chr8:55580989-55581448 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 0 |
| Conread position: | 72-583 |
| Cow position: | chr8:46816716-46817230 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 73-407 |
| Cow position: | chr8:45201606-45201940 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-528 |
| Cow position: | chr8:45201018-45201476 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 0 |
| Conread position: | 73-579 |
| Cow position: | chr8:55580906-55581414 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 311 |
| Conread position: | 73-580 |
| Cow position: | chr8:48407294-48406785 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 149 |
| Conread position: | 74-579 |
| Cow position: | chr8:46815962-46816469 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 99 |
| Conread position: | 84-579 |
| Cow position: | chr8:55580833-55581330 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 385 |
| Conread position: | 88-581 |
| Cow position: | chr8:45200949-45201444 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 93-530 |
| Cow position: | chr8:45200786-45201225 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 269, 265 |
| Conread position: | 94-446 |
| Cow position: | chr8:6958059-6957708 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 159-578 |
| Cow position: | chr8:45200936-45201357 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 225-535 |
| Cow position: | chr8:46815942-46816256 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 236 |
Show alignments to all cow chromosomes.