Cow genome map
| Conread name: | Ss1.1-Mixc-0028p05.3 |
| Conread position: | 1-583 |
| Cow position: | chrX:25309983-25310570 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 13-417 |
| Cow position: | chrX:29045071-29044664 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 17-586 |
| Cow position: | chrX:29045319-29044744 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 344 |
| Conread position: | 18-464 |
| Cow position: | chrX:13826670-13826221 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 237 |
| Conread position: | 18-579 |
| Cow position: | chrX:25309916-25310482 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 205 |
| Conread position: | 22-331 |
| Cow position: | chrX:29045714-29045403 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 16, 257 |
| Conread position: | 23-502 |
| Cow position: | chrX:25324717-25324234 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 305 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 21, 339 |
| Conread position: | 49-530 |
| Cow position: | chrX:25325359-25324876 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 0 |
| Conread position: | 49-579 |
| Cow position: | chrX:25325275-25324743 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 173 |
| Conread position: | 49-586 |
| Cow position: | chrX:25324855-25324315 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 512 |
| Conread position: | 50-579 |
| Cow position: | chrX:25325106-25324575 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 157 |
| Conread position: | 51-531 |
| Cow position: | chrX:13826802-13826320 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 142, 163 |
| Conread position: | 51-579 |
| Cow position: | chrX:25325693-25325163 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 302 |
| Conread position: | 52-336 |
| Cow position: | chrX:29044945-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-530 |
| Cow position: | chrX:25324936-25324456 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 92 |
| Conread position: | 52-579 |
| Cow position: | chrX:25309701-25310230 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 223 |
| Conread position: | 64-579 |
| Cow position: | chrX:25325428-25324911 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 143 |
| Conread position: | 67-579 |
| Cow position: | chrX:25325592-25325079 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 5 |
| Conread position: | 73-353 |
| Cow position: | chrX:14181222-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 60 |
| Conread position: | 73-410 |
| Cow position: | chrX:29045743-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 303, 280 |
| Conread position: | 76-581 |
| Cow position: | chrX:25325500-25324993 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 485 |
| Conread position: | 88-501 |
| Cow position: | chrX:13826933-13826518 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 116, 126 |
| Conread position: | 92-458 |
| Cow position: | chrX:29045808-29045445 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 95-486 |
| Cow position: | chrX:14181284-14180893 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 351, 344 |
| Conread position: | 131-522 |
| Cow position: | chrX:25309696-25310089 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 219-579 |
| Cow position: | chrX:25325777-25325415 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 226-518 |
| Cow position: | chrX:29045758-29045464 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 239, 234 |
| Conread position: | 238-587 |
| Cow position: | chrX:29045830-29045478 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 271-522 |
| Cow position: | chrX:25309668-25309921 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 213, 0 |
Show alignments to all cow chromosomes.