Cow genome map

Conread name: Ss1.1-Mixc-0029d09.5

Conread position: 533-764
Cow position: chr11:73798464-73798224 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 102

Conread position: 534-764
Cow position: chr11:61431495-61431255 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 94, 101

Conread position: 536-748
Cow position: chr11:29614590-29614811 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 99, 94

Conread position: 536-764
Cow position: chr11:23773498-23773736 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 92, 98

Conread position: 536-764
Cow position: chr11:32455298-32455535 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 92, 154

Conread position: 536-771
Cow position: chr11:13061922-13061672 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 24, 97

Conread position: 546-764
Cow position: chr11:2772592-2772818 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 82, 89

Conread position: 546-764
Cow position: chr11:30088130-30088358 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 83, 88

Conread position: 546-764
Cow position: chr11:87147963-87147735 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 82

Conread position: 546-774
Cow position: chr11:20730969-20730731 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 161
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 83, 218

Conread position: 556-764
Cow position: chr11:67920078-67919860 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 72

Conread position: 557-747
Cow position: chr11:1373446-1373643 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 72, 30

Conread position: 557-769
Cow position: chr11:23116720-23116941 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 71, 65

Conread position: 557-771
Cow position: chr11:9897639-9897860 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 126, 87

Conread position: 557-771
Cow position: chr11:10758460-10758248 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 193, 72

Conread position: 557-771
Cow position: chr11:19536809-19536591 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 108, 56

Conread position: 557-771
Cow position: chr11:33363660-33363882 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 127, 68

Conread position: 557-779
Cow position: chr11:35262535-35262298 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 557-787
Cow position: chr11:32029118-32028877 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 72, 195

Conread position: 558-748
Cow position: chr11:61313551-61313355 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 130, 14

Conread position: 558-752
Cow position: chr11:15702487-15702292 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 31

Conread position: 558-771
Cow position: chr11:37159819-37160043 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 558-771
Cow position: chr11:49236709-49236493 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 69, 125

Conread position: 558-773
Cow position: chr11:21155405-21155191 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 65, 34

Conread position: 558-775
Cow position: chr11:42682275-42682047 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 559-747
Cow position: chr11:38504964-38504767 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 81, 131

Conread position: 559-748
Cow position: chr11:4734550-4734748 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 76, 71

Conread position: 559-748
Cow position: chr11:20428529-20428727 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 76

Conread position: 559-748
Cow position: chr11:47846257-47846455 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 76, 72

Conread position: 559-748
Cow position: chr11:75360567-75360374 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 126

Conread position: 559-752
Cow position: chr11:47676492-47676694 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 559-755
Cow position: chr11:2293793-2293589 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:2345677-2345462 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:7152263-7152478 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:10698479-10698267 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 71

Conread position: 559-764
Cow position: chr11:10810754-10810539 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:10949154-10948939 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 131

Conread position: 559-764
Cow position: chr11:11315562-11315347 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 71

Conread position: 559-764
Cow position: chr11:12178355-12178570 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 71

Conread position: 559-764
Cow position: chr11:13015556-13015345 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:17078232-17078447 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:18587429-18587214 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:20285351-20285136 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:24333726-24333511 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:27724634-27724425 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:27943880-27944095 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:28619887-28620102 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:29999928-30000143 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:30777230-30777445 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:30929649-30929864 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:33147179-33146964 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:34638237-34638023 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:38819231-38819016 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:41162081-41162296 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 76, 71

Conread position: 559-764
Cow position: chr11:41260662-41260447 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:41261435-41261650 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:44356620-44356406 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 48

Conread position: 559-764
Cow position: chr11:44893612-44893397 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:46142722-46142507 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:47573269-47573054 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:48109023-48109238 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 71

Conread position: 559-764
Cow position: chr11:49632147-49631934 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:51034543-51034758 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:52424395-52424610 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 76, 69

Conread position: 559-764
Cow position: chr11:52846742-52846957 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 69

Conread position: 559-764
Cow position: chr11:54302804-54303019 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:54304170-54304385 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:56826868-56827083 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:57594824-57594609 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:58136983-58137193 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 102, 71

Conread position: 559-764
Cow position: chr11:60778017-60777802 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:68136460-68136675 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:70978125-70977910 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 69, 76

Conread position: 559-764
Cow position: chr11:71957612-71957397 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 75

Conread position: 559-764
Cow position: chr11:75256457-75256672 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:75710986-75710771 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 70, 76

Conread position: 559-764
Cow position: chr11:83001295-83001510 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 75

Conread position: 559-764
Cow position: chr11:84184048-84184263 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 76

Conread position: 559-771
Cow position: chr11:8552061-8552282 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 66, 129

Conread position: 559-774
Cow position: chr11:2534956-2535184 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 75

Conread position: 559-774
Cow position: chr11:8366827-8367055 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 71

Conread position: 559-774
Cow position: chr11:10043511-10043739 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 75

Conread position: 559-774
Cow position: chr11:22617679-22617451 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 69, 75

Conread position: 559-774
Cow position: chr11:52450782-52450554 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 75

Conread position: 559-786
Cow position: chr11:48484811-48484569 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 66, 75

Conread position: 559-792
Cow position: chr11:63260945-63260700 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 166
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 234

Conread position: 560-748
Cow position: chr11:37285370-37285180 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 69, 123

Conread position: 560-780
Cow position: chr11:73465946-73465713 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 560-792
Cow position: chr11:68547099-68547343 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 65

Conread position: 562-763
Cow position: chr11:43644789-43644577 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 562-771
Cow position: chr11:31310317-31310097 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 216

Conread position: 564-774
Cow position: chr11:61891278-61891499 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 71

Conread position: 565-766
Cow position: chr11:7143977-7143769 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 59, 158

Conread position: 565-796
Cow position: chr11:66605772-66605535 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 121

Show alignments to all cow chromosomes.