Cow genome map
| Conread name: | Ss1.1-Mixc-0029d09.5 |
| Conread position: | 534-764 |
| Cow position: | chr14:18191264-18191024 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 101, 96 |
| Conread position: | 534-764 |
| Cow position: | chr14:31737166-31737406 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 101 |
| Conread position: | 544-776 |
| Cow position: | chr14:36109640-36109399 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 84, 164 |
| Conread position: | 546-764 |
| Cow position: | chr14:34476781-34476553 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 82, 89 |
| Conread position: | 546-764 |
| Cow position: | chr14:38047375-38047603 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 87 |
| Conread position: | 546-764 |
| Cow position: | chr14:43299908-43300135 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 83, 24 |
| Conread position: | 546-764 |
| Cow position: | chr14:46848847-46848619 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 89, 82 |
| Conread position: | 546-767 |
| Cow position: | chr14:26128981-26128750 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 89, 84 |
| Conread position: | 554-752 |
| Cow position: | chr14:27208562-27208354 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 556-786 |
| Cow position: | chr14:31759375-31759135 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 228 |
| Conread position: | 557-747 |
| Cow position: | chr14:17904920-17904731 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 31 |
| Conread position: | 557-748 |
| Cow position: | chr14:8884676-8884484 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 557-767 |
| Cow position: | chr14:34906735-34906955 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 557-771 |
| Cow position: | chr14:10743224-10743012 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 104 |
| Conread position: | 557-771 |
| Cow position: | chr14:37334777-37334552 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 557-771 |
| Cow position: | chr14:42468073-42467857 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 92 |
| Conread position: | 557-787 |
| Cow position: | chr14:18979859-18980096 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 557-794 |
| Cow position: | chr14:32033169-32033415 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 558-764 |
| Cow position: | chr14:20467344-20467553 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 77 |
| Conread position: | 558-764 |
| Cow position: | chr14:39301676-39301886 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 91 |
| Conread position: | 558-771 |
| Cow position: | chr14:4174196-4173972 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 558-771 |
| Cow position: | chr14:19407103-19407326 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 558-779 |
| Cow position: | chr14:12545892-12546115 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 77 |
| Conread position: | 559-747 |
| Cow position: | chr14:9483159-9483356 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 559-748 |
| Cow position: | chr14:19318052-19318250 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-748 |
| Cow position: | chr14:21426788-21426590 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-748 |
| Cow position: | chr14:31156037-31156235 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 559-748 |
| Cow position: | chr14:44296780-44296582 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr14:10685970-10685755 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 559-764 |
| Cow position: | chr14:13582078-13582282 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 102 |
| Conread position: | 559-764 |
| Cow position: | chr14:21765411-21765626 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 81, 131 |
| Conread position: | 559-764 |
| Cow position: | chr14:30432706-30432921 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr14:31683720-31683505 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr14:31881677-31881462 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr14:32500500-32500709 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 69, 125 |
| Conread position: | 559-764 |
| Cow position: | chr14:33288827-33289042 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr14:34168510-34168725 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 559-764 |
| Cow position: | chr14:34625994-34626209 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr14:38237884-38237668 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 559-764 |
| Cow position: | chr14:46960599-46960814 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 559-764 |
| Cow position: | chr14:48572142-48571927 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 559-764 |
| Cow position: | chr14:49063451-49063666 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-771 |
| Cow position: | chr14:12951327-12951550 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 559-771 |
| Cow position: | chr14:18128811-18129030 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 66, 128 |
| Conread position: | 559-774 |
| Cow position: | chr14:9048044-9048272 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 559-779 |
| Cow position: | chr14:8396568-8396335 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-787 |
| Cow position: | chr14:35188330-35188099 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 53 |
| Conread position: | 560-771 |
| Cow position: | chr14:10878816-10878596 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 128 |
| Conread position: | 560-771 |
| Cow position: | chr14:41920691-41920900 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 560-771 |
| Cow position: | chr14:41962348-41962130 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 69, 59 |
| Conread position: | 561-771 |
| Cow position: | chr14:22047355-22047140 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 127 |
| Conread position: | 561-771 |
| Cow position: | chr14:28008510-28008294 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 67, 165 |
| Conread position: | 561-776 |
| Cow position: | chr14:19879218-19879436 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 562-748 |
| Cow position: | chr14:403380-403568 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 73, 66 |
Show alignments to all cow chromosomes.