Cow genome map
| Conread name: | Ss1.1-Mixc-0029d09.5 |
| Conread position: | 534-764 |
| Cow position: | chr21:23341356-23341596 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 101 |
| Conread position: | 534-764 |
| Cow position: | chr21:33107789-33107549 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 101 |
| Conread position: | 534-764 |
| Cow position: | chr21:41796020-41795779 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 94, 101 |
| Conread position: | 535-795 |
| Cow position: | chr21:39081659-39081385 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 544-748 |
| Cow position: | chr21:23606057-23606269 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 186 |
| Conread position: | 546-764 |
| Cow position: | chr21:47860-48088 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 144 |
| Conread position: | 546-774 |
| Cow position: | chr21:3496789-3496549 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 556-748 |
| Cow position: | chr21:45446391-45446590 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 557-764 |
| Cow position: | chr21:21216739-21216526 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 170 |
| Conread position: | 557-771 |
| Cow position: | chr21:13189834-13190057 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 140 |
| Conread position: | 557-771 |
| Cow position: | chr21:22456601-22456823 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 71, 173 |
| Conread position: | 557-771 |
| Cow position: | chr21:30250805-30250582 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 557-784 |
| Cow position: | chr21:6025596-6025359 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 104 |
| Conread position: | 557-787 |
| Cow position: | chr21:29633905-29634135 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 127 |
| Conread position: | 558-748 |
| Cow position: | chr21:5593593-5593400 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 155 |
| Conread position: | 558-748 |
| Cow position: | chr21:39385790-39385598 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 558-771 |
| Cow position: | chr21:11083224-11083002 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 17 |
| Conread position: | 558-771 |
| Cow position: | chr21:29942397-29942619 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 558-771 |
| Cow position: | chr21:44331886-44331668 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 89, 57 |
| Conread position: | 558-774 |
| Cow position: | chr21:39077490-39077264 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 558-779 |
| Cow position: | chr21:36296900-36297129 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 559-742 |
| Cow position: | chr21:27147822-27147630 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 131 |
| Conread position: | 559-748 |
| Cow position: | chr21:451610-451802 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 559-748 |
| Cow position: | chr21:3923641-3923839 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 559-748 |
| Cow position: | chr21:11327210-11327016 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 559-748 |
| Cow position: | chr21:25480001-25480199 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-764 |
| Cow position: | chr21:4719090-4718875 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr21:5642107-5641893 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 559-764 |
| Cow position: | chr21:7524847-7525062 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr21:10075534-10075319 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-764 |
| Cow position: | chr21:10756641-10756856 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr21:11292436-11292651 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr21:16575717-16575502 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr21:19613974-19614189 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 559-764 |
| Cow position: | chr21:19626980-19626765 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 559-764 |
| Cow position: | chr21:26628497-26628712 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 559-764 |
| Cow position: | chr21:30655369-30655584 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr21:33709770-33709555 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr21:33770407-33770622 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr21:36780855-36781070 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 559-764 |
| Cow position: | chr21:40478991-40479206 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-774 |
| Cow position: | chr21:26854963-26854735 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-778 |
| Cow position: | chr21:7597541-7597309 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-787 |
| Cow position: | chr21:26756993-26756753 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 560-773 |
| Cow position: | chr21:25813696-25813476 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 560-779 |
| Cow position: | chr21:665787-665565 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 123 |
| Conread position: | 561-764 |
| Cow position: | chr21:13735430-13735217 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 74 |
Show alignments to all cow chromosomes.