Cow genome map
| Conread name: | Ss1.1-Mixc-0029d09.5 |
| Conread position: | 533-747 |
| Cow position: | chr29:13876613-13876838 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 103 |
| Conread position: | 533-771 |
| Cow position: | chr29:32644220-32644467 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 547-774 |
| Cow position: | chr29:13646222-13645987 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 548-771 |
| Cow position: | chr29:18072249-18072486 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 551-764 |
| Cow position: | chr29:35736061-35735837 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 551-765 |
| Cow position: | chr29:39372229-39372444 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 64 |
| Conread position: | 554-771 |
| Cow position: | chr29:34120952-34120728 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 220 |
| Conread position: | 557-771 |
| Cow position: | chr29:12292943-12292719 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 557-787 |
| Cow position: | chr29:5311193-5310951 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 558-756 |
| Cow position: | chr29:36687679-36687881 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 136 |
| Conread position: | 558-759 |
| Cow position: | chr29:19124457-19124661 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 558-764 |
| Cow position: | chr29:15965987-15965771 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 558-771 |
| Cow position: | chr29:26128939-26128716 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 157 |
| Conread position: | 559-734 |
| Cow position: | chr29:26968301-26968485 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 559-748 |
| Cow position: | chr29:21227543-21227741 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-748 |
| Cow position: | chr29:21474717-21474915 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-748 |
| Cow position: | chr29:39214282-39214084 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-748 |
| Cow position: | chr29:43517396-43517204 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 559-764 |
| Cow position: | chr29:292055-292270 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 559-764 |
| Cow position: | chr29:607080-606865 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 131 |
| Conread position: | 559-764 |
| Cow position: | chr29:1688310-1688517 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 559-764 |
| Cow position: | chr29:2461724-2461939 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:2950234-2950449 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:5426286-5426071 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 559-764 |
| Cow position: | chr29:6413850-6414064 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 53 |
| Conread position: | 559-764 |
| Cow position: | chr29:10032085-10031870 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-764 |
| Cow position: | chr29:13623806-13623591 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:15251417-15251632 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-764 |
| Cow position: | chr29:15570101-15570317 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 6, 72 |
| Conread position: | 559-764 |
| Cow position: | chr29:15698889-15698674 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-764 |
| Cow position: | chr29:15768058-15767843 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr29:17458586-17458371 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:19524572-19524357 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:20075150-20075365 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:21429296-21429081 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-764 |
| Cow position: | chr29:22341080-22341295 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr29:32329692-32329477 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:32378139-32378354 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:32560449-32560234 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:39047668-39047883 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr29:40157312-40157527 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr29:40294875-40295090 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-767 |
| Cow position: | chr29:2520914-2521132 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 559-771 |
| Cow position: | chr29:16662388-16662601 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 106 |
| Conread position: | 559-774 |
| Cow position: | chr29:4610929-4611156 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-787 |
| Cow position: | chr29:2400922-2401164 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-787 |
| Cow position: | chr29:14568864-14569106 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 560-764 |
| Cow position: | chr29:11119143-11118929 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 68, 75 |
| Conread position: | 560-764 |
| Cow position: | chr29:17227751-17227959 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 125 |
| Conread position: | 560-764 |
| Cow position: | chr29:27702646-27702860 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 68 |
| Conread position: | 561-780 |
| Cow position: | chr29:4260706-4260935 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 64 |
Show alignments to all cow chromosomes.