Cow genome map
| Conread name: | Ss1.1-Mixc-0029d09.5 |
| Conread position: | 63-208 |
| Cow position: | chr9:33372081-33372226 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 141 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 206-803 |
| Cow position: | chr9:33372906-33373524 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 190 |
| Conread position: | 534-748 |
| Cow position: | chr9:47882856-47882633 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 94, 101 |
| Conread position: | 534-764 |
| Cow position: | chr9:13620567-13620327 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 101 |
| Conread position: | 534-764 |
| Cow position: | chr9:36025675-36025435 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 94, 101 |
| Conread position: | 535-771 |
| Cow position: | chr9:44518282-44518031 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 535-771 |
| Cow position: | chr9:44920696-44920944 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 536-745 |
| Cow position: | chr9:31417084-31416866 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 89, 99 |
| Conread position: | 536-757 |
| Cow position: | chr9:52003317-52003542 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 23, 150 |
| Conread position: | 536-764 |
| Cow position: | chr9:2715654-2715416 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 99 |
| Conread position: | 543-748 |
| Cow position: | chr9:11841723-11841507 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 546-778 |
| Cow position: | chr9:874095-874339 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 83, 89 |
| Conread position: | 551-779 |
| Cow position: | chr9:48068667-48068909 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 557-748 |
| Cow position: | chr9:23836856-23837052 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 557-764 |
| Cow position: | chr9:64105688-64105470 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 557-771 |
| Cow position: | chr9:8727790-8728015 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 557-780 |
| Cow position: | chr9:19509175-19508942 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 74, 148 |
| Conread position: | 557-780 |
| Cow position: | chr9:49964593-49964358 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 134 |
| Conread position: | 557-796 |
| Cow position: | chr9:29083113-29082863 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 73 |
| Conread position: | 558-768 |
| Cow position: | chr9:3722178-3722399 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 66, 173 |
| Conread position: | 558-771 |
| Cow position: | chr9:3075590-3075814 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 169 |
| Conread position: | 558-771 |
| Cow position: | chr9:44218294-44218518 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 558-780 |
| Cow position: | chr9:20848661-20848427 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 559-746 |
| Cow position: | chr9:48850797-48850612 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 559-747 |
| Cow position: | chr9:13313012-13313194 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-748 |
| Cow position: | chr9:241145-240947 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-748 |
| Cow position: | chr9:9093859-9093661 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-748 |
| Cow position: | chr9:36829597-36829399 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-748 |
| Cow position: | chr9:37908303-37908501 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-748 |
| Cow position: | chr9:43494503-43494701 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-748 |
| Cow position: | chr9:50002619-50002421 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-753 |
| Cow position: | chr9:31361718-31361515 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr9:3052719-3052934 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:3717818-3718033 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:4940039-4939824 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 559-764 |
| Cow position: | chr9:5452185-5451970 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:7830440-7830225 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-764 |
| Cow position: | chr9:9611432-9611217 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:10803127-10803342 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr9:12718047-12718262 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:14003431-14003646 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 131 |
| Conread position: | 559-764 |
| Cow position: | chr9:15670306-15670521 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr9:16639729-16639943 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:18243528-18243313 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr9:19222349-19222564 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:22243217-22243002 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr9:23000460-23000675 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:26171418-26171633 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:26431715-26431500 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr9:29625100-29625315 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:30118731-30118516 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 131 |
| Conread position: | 559-764 |
| Cow position: | chr9:37251467-37251682 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:37253859-37254074 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:39303098-39302883 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:42475632-42475417 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-764 |
| Cow position: | chr9:42696423-42696638 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-764 |
| Cow position: | chr9:47045402-47045617 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 559-764 |
| Cow position: | chr9:48794837-48794626 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 127 |
| Conread position: | 559-764 |
| Cow position: | chr9:49220776-49220561 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-764 |
| Cow position: | chr9:53564731-53564946 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr9:56301130-56300925 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 559-764 |
| Cow position: | chr9:56530957-56530742 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr9:60409857-60410072 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 559-764 |
| Cow position: | chr9:62817766-62817551 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 559-767 |
| Cow position: | chr9:4191772-4191990 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-771 |
| Cow position: | chr9:56562211-56562421 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 559-774 |
| Cow position: | chr9:1405245-1405472 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 559-774 |
| Cow position: | chr9:12378900-12379128 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 131 |
| Conread position: | 559-774 |
| Cow position: | chr9:26326200-26326428 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 559-774 |
| Cow position: | chr9:30187160-30187387 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 559-774 |
| Cow position: | chr9:42172171-42172398 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 559-774 |
| Cow position: | chr9:56564984-56565212 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 560-764 |
| Cow position: | chr9:216555-216341 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 560-764 |
| Cow position: | chr9:47087903-47088117 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 560-771 |
| Cow position: | chr9:44579769-44579548 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 68, 169 |
| Conread position: | 561-764 |
| Cow position: | chr9:10918859-10919072 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 561-764 |
| Cow position: | chr9:12545552-12545765 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 564-764 |
| Cow position: | chr9:56530094-56529884 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 564-764 |
| Cow position: | chr9:56531543-56531333 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 564-771 |
| Cow position: | chr9:37168920-37169138 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 565-747 |
| Cow position: | chr9:34802437-34802629 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 566-771 |
| Cow position: | chr9:14343607-14343398 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 117 |
| Conread position: | 574-773 |
| Cow position: | chr9:62763872-62763676 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 113 |
| Conread position: | 574-796 |
| Cow position: | chr9:9986459-9986239 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 98, 42 |
Show alignments to all cow chromosomes.