Cow genome map
| Conread name: | Ss1.1-Mixc-0031,e07.3 |
| Conread position: | 636-1082 |
| Cow position: | chr17:22589960-22589511 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 638-1017 |
| Cow position: | chr17:22452152-22451773 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 43 |
| Conread position: | 640-1088 |
| Cow position: | chr17:22473481-22473929 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 143, 136 |
| Conread position: | 641-1010 |
| Cow position: | chr17:22590122-22589753 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 129, 124 |
| Conread position: | 641-1082 |
| Cow position: | chr17:22552200-22551757 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 40 |
| Conread position: | 642-996 |
| Cow position: | chr17:22551863-22551509 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 642-1009 |
| Cow position: | chr17:22452316-22451949 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 642-1010 |
| Cow position: | chr17:22498910-22498542 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 145, 138 |
| Conread position: | 642-1010 |
| Cow position: | chr17:22499330-22498962 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 214, 207 |
| Conread position: | 642-1080 |
| Cow position: | chr17:22553039-22552599 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 184, 164 |
| Conread position: | 642-1082 |
| Cow position: | chr17:22499414-22498972 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 56 |
| Conread position: | 642-1083 |
| Cow position: | chr17:22552283-22551840 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 642-1083 |
| Cow position: | chr17:22552451-22552008 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 642-1083 |
| Cow position: | chr17:22589617-22589174 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 643-1082 |
| Cow position: | chr17:22553122-22552681 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 42, 38 |
| Conread position: | 648-997 |
| Cow position: | chr17:22452395-22452045 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 653-1083 |
| Cow position: | chr17:22552608-22552176 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 654-1082 |
| Cow position: | chr17:22552859-22552429 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 654-1082 |
| Cow position: | chr17:22552943-22552513 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 654-1082 |
| Cow position: | chr17:22589689-22589259 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 654-1083 |
| Cow position: | chr17:22499150-22498719 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 181, 171 |
| Conread position: | 654-1083 |
| Cow position: | chr17:22499234-22498803 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 654-1083 |
| Cow position: | chr17:22590193-22589762 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 658-1018 |
| Cow position: | chr17:22552351-22551991 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 658-1043 |
| Cow position: | chr17:22590021-22589636 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 658-1082 |
| Cow position: | chr17:22552099-22551673 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 658-1082 |
| Cow position: | chr17:22552771-22552345 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 112, 107 |
| Conread position: | 658-1083 |
| Cow position: | chr17:22589769-22589342 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 660-1010 |
| Cow position: | chr17:22452214-22451864 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 660-1017 |
| Cow position: | chr17:22452046-22451689 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 175, 166 |
| Conread position: | 660-1082 |
| Cow position: | chr17:22473417-22473841 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 662-1081 |
| Cow position: | chr17:22590269-22589848 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 131, 115 |
| Conread position: | 663-1010 |
| Cow position: | chr17:22473336-22473683 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 124, 113 |
| Conread position: | 715-1081 |
| Cow position: | chr17:22590300-22589932 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 721-1078 |
| Cow position: | chr17:22473226-22473583 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 834-1088 |
| Cow position: | chr17:22499306-22499052 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.