Cow genome map
| Conread name: | Ss1.1-Mixc-0031,e07.3 |
| Conread position: | 591-1029 |
| Cow position: | chr19:43570296-43569855 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 37, 114 |
| Conread position: | 637-1008 |
| Cow position: | chr19:14948406-14948035 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 637-1017 |
| Cow position: | chr19:23613913-23614293 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 189, 165 |
| Conread position: | 637-1029 |
| Cow position: | chr19:23613661-23614053 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 198, 176 |
| Conread position: | 637-1088 |
| Cow position: | chr19:23613409-23613859 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 75, 61 |
| Conread position: | 638-796 |
| Cow position: | chr19:14940890-14941048 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 639-997 |
| Cow position: | chr19:14960078-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 71, 58 |
| Conread position: | 639-1082 |
| Cow position: | chr19:14940303-14940748 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 0 |
| Conread position: | 640-1067 |
| Cow position: | chr19:20635485-20635058 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 641-1077 |
| Cow position: | chr19:23649703-23650139 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 232, 218 |
| Conread position: | 642-985 |
| Cow position: | chr19:14940726-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 193, 172 |
| Conread position: | 642-991 |
| Cow position: | chr19:23614758-23615107 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 642-1005 |
| Cow position: | chr19:14959176-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 178, 56 |
| Conread position: | 642-1006 |
| Cow position: | chr19:23597347-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 642-1009 |
| Cow position: | chr19:23649872-23650239 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 642-1011 |
| Cow position: | chr19:23613498-23613867 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 642-1017 |
| Cow position: | chr19:23613834-23614209 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 642-1063 |
| Cow position: | chr19:20678185-20678606 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 167, 138 |
| Conread position: | 642-1075 |
| Cow position: | chr19:23614506-23614939 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 55 |
| Conread position: | 642-1082 |
| Cow position: | chr19:14960325-14959885 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 149, 134 |
| Conread position: | 642-1082 |
| Cow position: | chr19:14960409-14959969 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 68, 56 |
| Conread position: | 642-1083 |
| Cow position: | chr19:14940054-14940497 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 184, 171 |
| Conread position: | 642-1083 |
| Cow position: | chr19:23613582-23614025 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 642-1088 |
| Cow position: | chr19:14960157-14959715 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 643-1005 |
| Cow position: | chr19:20635396-20635036 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 646-1055 |
| Cow position: | chr19:23614426-23614835 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 141, 134 |
| Conread position: | 646-1083 |
| Cow position: | chr19:23596934-23597370 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 652-1077 |
| Cow position: | chr19:23649378-23649803 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 653-1017 |
| Cow position: | chr19:20677860-20678224 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 653-1073 |
| Cow position: | chr19:23597190-23597611 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 387, 394 |
| Conread position: | 653-1082 |
| Cow position: | chr19:23649547-23649978 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 393, 373 |
| Conread position: | 654-1017 |
| Cow position: | chr19:20677609-20677972 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 177, 181 |
| Conread position: | 654-1066 |
| Cow position: | chr19:23614266-23614678 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 654-1076 |
| Cow position: | chr19:14940654-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 172 |
| Conread position: | 654-1077 |
| Cow position: | chr19:23650052-23650475 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 654-1078 |
| Cow position: | chr19:23614350-23614774 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 654-1082 |
| Cow position: | chr19:14940150-14940580 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 39 |
| Conread position: | 654-1082 |
| Cow position: | chr19:20635639-20635209 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 181, 172 |
| Conread position: | 654-1083 |
| Cow position: | chr19:23614098-23614529 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 654-1083 |
| Cow position: | chr19:23614686-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 129, 122 |
| Conread position: | 656-1082 |
| Cow position: | chr19:14960479-14960053 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 200, 193 |
| Conread position: | 658-929 |
| Cow position: | chr19:23597447-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 138, 116 |
| Conread position: | 658-1075 |
| Cow position: | chr19:14948468-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 658-1076 |
| Cow position: | chr19:23649468-23649886 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 658-1082 |
| Cow position: | chr19:14940574-14941000 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 177, 167 |
| Conread position: | 659-1087 |
| Cow position: | chr19:14959243-14958821 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 282 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 171, 124 |
| Conread position: | 660-937 |
| Cow position: | chr19:20635297-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 142, 129 |
| Conread position: | 660-999 |
| Cow position: | chr19:23650142-23650481 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 166, 153 |
| Conread position: | 660-1010 |
| Cow position: | chr19:20677699-20678049 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 178, 165 |
| Conread position: | 660-1017 |
| Cow position: | chr19:20635549-20635192 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 135, 121 |
| Conread position: | 660-1040 |
| Cow position: | chr19:43570140-43569760 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 196, 189 |
| Conread position: | 660-1054 |
| Cow position: | chr19:23649638-23650032 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 153 |
| Conread position: | 660-1075 |
| Cow position: | chr19:14939988-14940403 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 660-1075 |
| Cow position: | chr19:23597113-23597528 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 136, 120 |
| Conread position: | 660-1077 |
| Cow position: | chr19:23614020-23614437 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 660-1082 |
| Cow position: | chr19:14959569-14959154 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 21 |
| Conread position: | 660-1082 |
| Cow position: | chr19:23613768-23614192 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 141, 116 |
| Conread position: | 660-1082 |
| Cow position: | chr19:23649974-23650396 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 273 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 660-1083 |
| Cow position: | chr19:20678287-20678712 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 660-1084 |
| Cow position: | chr19:23597281-23597704 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 105 |
| Conread position: | 662-1010 |
| Cow position: | chr19:20677533-20677881 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 684-1075 |
| Cow position: | chr19:14959711-14959322 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 110, 60 |
| Conread position: | 726-1024 |
| Cow position: | chr19:23597095-23597393 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 746-1077 |
| Cow position: | chr19:14939990-14940321 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 85, 100 |
Show alignments to all cow chromosomes.