Cow genome map

Conread name: Ss1.1-Mixc-0031,e07.3

Conread position: 625-987
Cow position: chr22:12458138-12457779 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 235
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 94, 20

Conread position: 627-1005
Cow position: chr22:12475668-12475290 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 242
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 202, 179

Conread position: 627-1017
Cow position: chr22:12499423-12499813 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 248
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 82, 70

Conread position: 627-1075
Cow position: chr22:12475836-12475388 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 280
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 58, 54

Conread position: 634-1076
Cow position: chr22:11701240-11701683 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 270
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 9, 58

Conread position: 636-1009
Cow position: chr22:12544891-12545264 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 241
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 45

Conread position: 638-1083
Cow position: chr22:12399532-12399085 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 285
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 149, 159

Conread position: 638-1090
Cow position: chr22:12432016-12431565 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 273
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 170, 138

Conread position: 639-1088
Cow position: chr22:12431847-12431399 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 269
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 69, 60

Conread position: 640-924
Cow position: chr22:12475571-12475287 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 193
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 70, 53

Conread position: 640-924
Cow position: chr22:12499688-12499972 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 185
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 195, 185

Conread position: 640-1010
Cow position: chr22:12458462-12458092 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 248
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 45, 41

Conread position: 640-1077
Cow position: chr22:12418965-12418528 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 263
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 147, 136

Conread position: 641-1033
Cow position: chr22:14429877-14430268 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 253
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 82, 53

Conread position: 642-834
Cow position: chr22:12499774-12499967 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 133
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 184, 0

Conread position: 642-997
Cow position: chr22:12458544-12458189 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 226
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 128, 123

Conread position: 642-1004
Cow position: chr22:11701333-11701695 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 220
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 55

Conread position: 642-1011
Cow position: chr22:12399444-12399075 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 247
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 81, 56

Conread position: 642-1016
Cow position: chr22:12399360-12398986 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 248
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 150, 138

Conread position: 642-1016
Cow position: chr22:12498934-12499308 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 228
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 127, 123

Conread position: 642-1017
Cow position: chr22:12431424-12431049 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 249
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 76, 55

Conread position: 642-1017
Cow position: chr22:12458292-12457917 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 225
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 245, 219

Conread position: 642-1017
Cow position: chr22:12475737-12475362 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 239
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 67, 55

Conread position: 642-1017
Cow position: chr22:14467955-14468330 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 241
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 52

Conread position: 642-1018
Cow position: chr22:12458208-12457832 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 243
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 141, 134

Conread position: 642-1025
Cow position: chr22:12418879-12418496 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 237
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 66, 51

Conread position: 642-1070
Cow position: chr22:11666511-11666939 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 271
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 67, 55

Conread position: 642-1075
Cow position: chr22:12431088-12430655 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 272
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 141, 133

Conread position: 642-1075
Cow position: chr22:46654161-46654594 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 275
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 63, 68

Conread position: 642-1077
Cow position: chr22:11640838-11641273 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 272
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 253, 240

Conread position: 642-1077
Cow position: chr22:12431256-12430821 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 264
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 184, 164

Conread position: 642-1077
Cow position: chr22:12476325-12475890 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 267
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 128, 123

Conread position: 642-1078
Cow position: chr22:12399192-12398756 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 39

Conread position: 642-1082
Cow position: chr22:12499522-12499964 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 270
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 55

Conread position: 642-1082
Cow position: chr22:14429710-14430152 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 276
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 150, 138

Conread position: 642-1083
Cow position: chr22:12399696-12399253 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 287
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 253, 247

Conread position: 642-1088
Cow position: chr22:11641006-11641452 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 286
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 148, 133

Conread position: 642-1088
Cow position: chr22:12432264-12431819 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 287
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 60, 69

Conread position: 642-1092
Cow position: chr22:12431592-12431142 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 282
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 182, 160

Conread position: 643-1001
Cow position: chr22:46654498-46654857 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 225
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 183, 191

Conread position: 643-1017
Cow position: chr22:12419315-12418924 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 223
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 192, 183

Conread position: 643-1077
Cow position: chr22:12458627-12458193 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 268
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 141, 133

Conread position: 646-1018
Cow position: chr22:12476153-12475781 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 239
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 63, 47

Conread position: 647-1044
Cow position: chr22:14430301-14430700 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 257
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 7, 48

Conread position: 652-1082
Cow position: chr22:12432170-12431740 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 265
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 135, 128

Conread position: 653-1040
Cow position: chr22:12432337-12431951 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 251
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 133, 144

Conread position: 653-1076
Cow position: chr22:12432421-12431998 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 261
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 138, 127

Conread position: 653-1077
Cow position: chr22:12476230-12475806 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 268
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 32, 28

Conread position: 653-1077
Cow position: chr22:12499029-12499453 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 274
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 32, 28

Conread position: 654-1017
Cow position: chr22:14429806-14430169 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 234
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 133, 126

Conread position: 654-1024
Cow position: chr22:12499114-12499484 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 244
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 52, 39

Conread position: 654-1077
Cow position: chr22:12475977-12475554 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 271
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 54, 43

Conread position: 654-1082
Cow position: chr22:12385508-12385076 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 284
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 100, 113

Conread position: 654-1082
Cow position: chr22:12399768-12399338 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 279
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 241, 235

Conread position: 654-1083
Cow position: chr22:12399600-12399169 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 280
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 57, 43

Conread position: 656-1084
Cow position: chr22:12432502-12432072 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 278
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 44, 29

Conread position: 658-1017
Cow position: chr22:12385588-12385227 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 229
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 47, 54

Conread position: 658-1088
Cow position: chr22:12431156-12430727 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 278
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 52, 36

Conread position: 659-1077
Cow position: chr22:12432079-12431661 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 265
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 62, 38

Conread position: 660-955
Cow position: chr22:14429980-14430275 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 194
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 63, 34

Conread position: 660-1006
Cow position: chr22:46654095-46654441 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 217
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 123, 116

Conread position: 660-1010
Cow position: chr22:12476391-12476041 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 228
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 49, 37

Conread position: 660-1010
Cow position: chr22:14468141-14468491 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 221
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 50, 37

Conread position: 660-1032
Cow position: chr22:46654431-46654802 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 236
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 42

Conread position: 660-1075
Cow position: chr22:12430986-12430571 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 258
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 38, 49

Conread position: 660-1077
Cow position: chr22:11640772-11641189 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 262
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 46, 31

Conread position: 660-1077
Cow position: chr22:12498868-12499285 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 267
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 49, 37

Conread position: 660-1083
Cow position: chr22:12385332-12384907 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 266
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 58, 31

Conread position: 660-1083
Cow position: chr22:12458358-12457933 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 266
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 390, 380

Conread position: 660-1088
Cow position: chr22:14468057-14468484 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 277
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 65, 57

Conread position: 660-1088
Cow position: chr22:46654263-46654690 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 259
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 123, 116

Conread position: 661-919
Cow position: chr22:12458021-12457763 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 170
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 36

Conread position: 661-1064
Cow position: chr22:46654012-46654415 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 252
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 49

Conread position: 662-992
Cow position: chr22:12418775-12418445 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 207
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 19

Conread position: 664-1011
Cow position: chr22:12499292-12499639 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 40, 30

Conread position: 664-1016
Cow position: chr22:12385666-12385312 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 233
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 132, 112

Conread position: 668-1077
Cow position: chr22:12399838-12399429 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 145

Conread position: 671-1017
Cow position: chr22:11640615-11640961 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 214
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 42, 28

Conread position: 675-1017
Cow position: chr22:11666460-11666802 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 220
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 112, 101

Conread position: 675-1077
Cow position: chr22:11701114-11701516 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 246
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 115, 105

Conread position: 676-1075
Cow position: chr22:12419013-12418614 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 237
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 723-1073
Cow position: chr22:12498847-12499198 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 225
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 100, 85

Conread position: 726-1073
Cow position: chr22:12476409-12476061 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 218
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 65, 54

Conread position: 854-1078
Cow position: chr22:12458584-12458360 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 34

Show alignments to all cow chromosomes.