Cow genome map
| Conread name: | Ss1.1-Mixc-0031,e07.3 |
| Conread position: | 605-958 |
| Cow position: | chr23:24560437-24560091 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 188, 11 |
| Conread position: | 619-983 |
| Cow position: | chr23:24522524-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 634-1007 |
| Cow position: | chr23:24535821-24535448 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 179, 189 |
| Conread position: | 637-1082 |
| Cow position: | chr23:25626257-25626701 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 272, 277 |
| Conread position: | 638-1077 |
| Cow position: | chr23:24560830-24560391 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 638-1078 |
| Cow position: | chr23:24560578-24560138 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 59 |
| Conread position: | 639-847 |
| Cow position: | chr23:24626537-24626743 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 130, 126 |
| Conread position: | 639-1082 |
| Cow position: | chr23:24560661-24560216 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 640-908 |
| Cow position: | chr23:25723981-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 155, 182 |
| Conread position: | 641-931 |
| Cow position: | chr23:24639783-24640073 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 641-1088 |
| Cow position: | chr23:24547351-24546905 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 642-993 |
| Cow position: | chr23:24626372-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 134 |
| Conread position: | 642-1000 |
| Cow position: | chr23:24560490-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 642-1006 |
| Cow position: | chr23:24639700-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 193, 183 |
| Conread position: | 642-1017 |
| Cow position: | chr23:24547266-24546891 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 62, 51 |
| Conread position: | 642-1025 |
| Cow position: | chr23:25698592-25698209 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 253, 234 |
| Conread position: | 642-1075 |
| Cow position: | chr23:24547182-24546749 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 642-1077 |
| Cow position: | chr23:25626595-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 193, 183 |
| Conread position: | 642-1093 |
| Cow position: | chr23:24547098-24546648 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 181 |
| Conread position: | 646-1077 |
| Cow position: | chr23:25660219-25660650 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 165, 134 |
| Conread position: | 652-1010 |
| Cow position: | chr23:25660309-25660667 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 653-992 |
| Cow position: | chr23:25724052-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 203, 196 |
| Conread position: | 653-999 |
| Cow position: | chr23:25660394-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 653-1077 |
| Cow position: | chr23:24639543-24639967 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 271 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 653-1078 |
| Cow position: | chr23:24639459-24639884 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 277 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 653-1088 |
| Cow position: | chr23:24639627-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 285 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 658-995 |
| Cow position: | chr23:25626194-25626532 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 155, 169 |
| Conread position: | 658-1055 |
| Cow position: | chr23:25626026-25626423 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 658-1083 |
| Cow position: | chr23:24536049-24535622 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 125, 118 |
| Conread position: | 660-938 |
| Cow position: | chr23:24626474-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 660-987 |
| Cow position: | chr23:24654115-24654441 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 660-1017 |
| Cow position: | chr23:25660149-25660506 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 175, 153 |
| Conread position: | 660-1033 |
| Cow position: | chr23:25626697-25627070 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 37 |
| Conread position: | 660-1081 |
| Cow position: | chr23:24626306-24626727 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 661-1016 |
| Cow position: | chr23:24522569-24522214 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 122, 115 |
| Conread position: | 661-1083 |
| Cow position: | chr23:25698657-25698233 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 662-1077 |
| Cow position: | chr23:24560890-24560475 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 151, 171 |
| Conread position: | 662-1083 |
| Cow position: | chr23:24522733-24522313 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 156, 126 |
| Conread position: | 662-1087 |
| Cow position: | chr23:25626534-25626956 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 121, 40 |
| Conread position: | 674-996 |
| Cow position: | chr23:24654045-24654367 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 120, 102 |
| Conread position: | 675-1082 |
| Cow position: | chr23:24626241-24626646 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 675-1082 |
| Cow position: | chr23:24639229-24639638 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 155, 138 |
| Conread position: | 678-1076 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 678-1078 |
| Cow position: | chr23:24535861-24535461 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 135, 145 |
| Conread position: | 678-1083 |
| Cow position: | chr23:24560706-24560299 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 725-1078 |
| Cow position: | chr23:24560911-24560558 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 131, 124 |
| Conread position: | 744-1075 |
| Cow position: | chr23:24654030-24654362 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 854-1077 |
| Cow position: | chr23:25660175-25660398 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 855-1077 |
| Cow position: | chr23:24654058-24654280 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.