Cow genome map
| Conread name: | Ss1.1-Mixc-0031,e07.3 |
| Conread position: | 591-1018 |
| Cow position: | chr28:7758336-7758763 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 230, 222 |
| Conread position: | 637-1077 |
| Cow position: | chr28:34695718-34696158 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 201, 166 |
| Conread position: | 638-994 |
| Cow position: | chr28:7758467-7758822 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 328, 313 |
| Conread position: | 639-1065 |
| Cow position: | chr28:34695888-34696314 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 101, 92 |
| Conread position: | 640-1076 |
| Cow position: | chr28:11333656-11333220 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 215, 174 |
| Conread position: | 640-1077 |
| Cow position: | chr28:34696057-34696494 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 642-926 |
| Cow position: | chr28:9253334-9253619 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 171, 179 |
| Conread position: | 642-929 |
| Cow position: | chr28:9299284-9299571 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 642-995 |
| Cow position: | chr28:9253250-9253603 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 62, 51 |
| Conread position: | 642-1006 |
| Cow position: | chr28:9290315-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 125, 61 |
| Conread position: | 642-1017 |
| Cow position: | chr28:7810570-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 150, 138 |
| Conread position: | 642-1017 |
| Cow position: | chr28:9290233-9290604 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 176, 26 |
| Conread position: | 642-1036 |
| Cow position: | chr28:34673418-34673812 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 147, 157 |
| Conread position: | 642-1037 |
| Cow position: | chr28:7757815-7758209 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 70, 56 |
| Conread position: | 642-1073 |
| Cow position: | chr28:7810411-7810834 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 179, 130 |
| Conread position: | 642-1075 |
| Cow position: | chr28:7757731-7758164 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 642-1077 |
| Cow position: | chr28:7757899-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 642-1082 |
| Cow position: | chr28:7810327-7810760 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 285 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 642-1082 |
| Cow position: | chr28:9253082-9253524 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 283 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 213, 207 |
| Conread position: | 642-1082 |
| Cow position: | chr28:9290151-9290587 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 151, 56 |
| Conread position: | 644-1077 |
| Cow position: | chr28:34695809-34696242 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 644-1083 |
| Cow position: | chr28:11334156-11333715 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 126, 122 |
| Conread position: | 646-1006 |
| Cow position: | chr28:33210295-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 180, 168 |
| Conread position: | 646-1082 |
| Cow position: | chr28:7757399-7757837 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 167 |
| Conread position: | 648-1032 |
| Cow position: | chr28:9298801-9299184 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 649-1077 |
| Cow position: | chr28:34695982-34696410 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 653-923 |
| Cow position: | chr28:33210386-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 160, 182 |
| Conread position: | 653-983 |
| Cow position: | chr28:34696238-34696568 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 654-1077 |
| Cow position: | chr28:11333978-11333555 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 181, 171 |
| Conread position: | 654-1082 |
| Cow position: | chr28:7757659-7758089 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 172, 152 |
| Conread position: | 654-1082 |
| Cow position: | chr28:9252927-9253356 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 654-1116 |
| Cow position: | chr28:9253178-9253640 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 118 |
| Conread position: | 657-1083 |
| Cow position: | chr28:7758318-7758746 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 135, 119 |
| Conread position: | 658-940 |
| Cow position: | chr28:9290414-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 658-1036 |
| Cow position: | chr28:7757579-7757957 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 658-1076 |
| Cow position: | chr28:9299062-9299466 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 214, 108 |
| Conread position: | 658-1082 |
| Cow position: | chr28:7757495-7757921 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 658-1082 |
| Cow position: | chr28:9253014-9253440 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 0 |
| Conread position: | 660-1080 |
| Cow position: | chr28:34696161-34696581 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 660-1088 |
| Cow position: | chr28:11333804-11333383 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 663-1056 |
| Cow position: | chr28:11334053-11333661 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 684-1010 |
| Cow position: | chr28:7810285-7810602 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 684-1082 |
| Cow position: | chr28:11334200-11333800 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 150, 124 |
| Conread position: | 726-1010 |
| Cow position: | chr28:7810252-7810527 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 726-1082 |
| Cow position: | chr28:9290067-9290420 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 744-1010 |
| Cow position: | chr28:33210225-33210491 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 71 |
| Conread position: | 855-1082 |
| Cow position: | chr28:7810288-7810517 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 215, 0 |
Show alignments to all cow chromosomes.