Cow genome map
| Conread name: | Ss1.1-Mixc-0031,e07.3 |
| Conread position: | 631-1017 |
| Cow position: | chr7:8325625-8326011 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 87, 66 |
| Conread position: | 638-1018 |
| Cow position: | chr7:42879301-42878921 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 639-1083 |
| Cow position: | chr7:11600959-11600513 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 277 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 176, 189 |
| Conread position: | 640-1077 |
| Cow position: | chr7:1015000-1015437 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 173 |
| Conread position: | 642-971 |
| Cow position: | chr7:18390479-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 15 |
| Conread position: | 642-1000 |
| Cow position: | chr7:8325804-8326166 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 49 |
| Conread position: | 642-1006 |
| Cow position: | chr7:1015086-1015450 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 66, 56 |
| Conread position: | 642-1011 |
| Cow position: | chr7:18390393-18390762 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 141, 134 |
| Conread position: | 642-1017 |
| Cow position: | chr7:8277323-8277698 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 55 |
| Conread position: | 642-1017 |
| Cow position: | chr7:8277743-8278118 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 184, 136 |
| Conread position: | 642-1017 |
| Cow position: | chr7:8324964-8325339 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 642-1036 |
| Cow position: | chr7:42878877-42878483 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 207 |
| Conread position: | 642-1038 |
| Cow position: | chr7:8325384-8325780 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 85, 51 |
| Conread position: | 642-1082 |
| Cow position: | chr7:1014336-1014772 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 68, 55 |
| Conread position: | 642-1082 |
| Cow position: | chr7:3179760-3180202 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 286 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 141, 134 |
| Conread position: | 642-1082 |
| Cow position: | chr7:11601208-11600766 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 214, 207 |
| Conread position: | 642-1082 |
| Cow position: | chr7:18390225-18390667 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 171, 181 |
| Conread position: | 642-1082 |
| Cow position: | chr7:42879045-42878603 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 642-1083 |
| Cow position: | chr7:3179928-3180371 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 171 |
| Conread position: | 642-1083 |
| Cow position: | chr7:3180264-3180707 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 138 |
| Conread position: | 642-1083 |
| Cow position: | chr7:42878961-42878518 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 647-1017 |
| Cow position: | chr7:8325051-8325423 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 52 |
| Conread position: | 647-1077 |
| Cow position: | chr7:3179849-3180279 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 287 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 647-1094 |
| Cow position: | chr7:8242865-8243314 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 52 |
| Conread position: | 653-1000 |
| Cow position: | chr7:3180443-3180790 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 654-999 |
| Cow position: | chr7:11600776-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 172, 160 |
| Conread position: | 654-1001 |
| Cow position: | chr7:3180528-3180874 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 37 |
| Conread position: | 654-1010 |
| Cow position: | chr7:1439882-1440237 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 152, 89 |
| Conread position: | 654-1017 |
| Cow position: | chr7:3180108-3180471 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 233, 240 |
| Conread position: | 654-1017 |
| Cow position: | chr7:3180192-3180555 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 56, 39 |
| Conread position: | 654-1039 |
| Cow position: | chr7:8278007-8278392 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 654-1075 |
| Cow position: | chr7:3180024-3180445 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 172, 160 |
| Conread position: | 654-1077 |
| Cow position: | chr7:18390321-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 654-1077 |
| Cow position: | chr7:42878781-42878358 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 654-1081 |
| Cow position: | chr7:42878697-42878270 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 654-1083 |
| Cow position: | chr7:1014678-1015109 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 50 |
| Conread position: | 654-1083 |
| Cow position: | chr7:1014930-1015361 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 655-1024 |
| Cow position: | chr7:18390154-18390523 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 128, 121 |
| Conread position: | 658-1082 |
| Cow position: | chr7:1014766-1015192 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 276 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 129, 119 |
| Conread position: | 659-948 |
| Cow position: | chr7:1438413-1438702 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 659-1077 |
| Cow position: | chr7:1439632-1440052 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 138 |
| Conread position: | 660-961 |
| Cow position: | chr7:1439971-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 195, 184 |
| Conread position: | 660-1024 |
| Cow position: | chr7:8325486-8325850 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 660-1027 |
| Cow position: | chr7:8242964-8243331 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 660-1082 |
| Cow position: | chr7:8324730-8325154 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 660-1082 |
| Cow position: | chr7:18390075-18390499 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 153, 163 |
| Conread position: | 660-1083 |
| Cow position: | chr7:3180366-3180791 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 660-1085 |
| Cow position: | chr7:8325318-8325745 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 662-1081 |
| Cow position: | chr7:8324816-8325237 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 114 |
| Conread position: | 664-1016 |
| Cow position: | chr7:8277597-8277949 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 687-1082 |
| Cow position: | chr7:3179721-3180118 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 148, 138 |
| Conread position: | 718-1082 |
| Cow position: | chr7:42879305-42878939 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 74, 58 |
| Conread position: | 726-1017 |
| Cow position: | chr7:1439870-1440160 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 100, 82 |
| Conread position: | 729-1077 |
| Cow position: | chr7:1439452-1439802 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 854-1018 |
| Cow position: | chr7:16643336-16643500 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.