Cow genome map
| Conread name: | Ss1.1-Mixc-0031,e07.3 |
| Conread position: | 625-1037 |
| Cow position: | chrX:25309771-25310180 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 230, 19 |
| Conread position: | 634-1016 |
| Cow position: | chrX:25325112-25324730 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 201, 192 |
| Conread position: | 638-1082 |
| Cow position: | chrX:25309949-25310395 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 151, 160 |
| Conread position: | 640-1082 |
| Cow position: | chrX:29045199-29044755 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 42 |
| Conread position: | 641-1082 |
| Cow position: | chrX:29045849-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 641-1083 |
| Cow position: | chrX:25309868-25310312 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 642-930 |
| Cow position: | chrX:29044945-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 642-991 |
| Cow position: | chrX:25324600-25324251 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 642-1010 |
| Cow position: | chrX:25325524-25325156 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 642-1070 |
| Cow position: | chrX:25325272-25324844 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 642-1082 |
| Cow position: | chrX:25310121-25310563 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 148, 158 |
| Conread position: | 642-1082 |
| Cow position: | chrX:25325020-25324578 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 70, 55 |
| Conread position: | 642-1082 |
| Cow position: | chrX:25325356-25324914 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 642-1082 |
| Cow position: | chrX:25325776-25325334 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 646-1082 |
| Cow position: | chrX:25324932-25324496 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 63, 47 |
| Conread position: | 653-1019 |
| Cow position: | chrX:13826874-13826508 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 654-1000 |
| Cow position: | chrX:29045017-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 654-1025 |
| Cow position: | chrX:25310217-25310587 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 654-1070 |
| Cow position: | chrX:25324672-25324256 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 654-1082 |
| Cow position: | chrX:25325428-25324998 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 116, 111 |
| Conread position: | 654-1083 |
| Cow position: | chrX:29045269-29044838 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 112 |
| Conread position: | 658-1011 |
| Cow position: | chrX:25325592-25325239 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 111, 107 |
| Conread position: | 658-1036 |
| Cow position: | chrX:25309717-25310096 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 658-1082 |
| Cow position: | chrX:29045097-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 277 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 660-1082 |
| Cow position: | chrX:12627519-12627942 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 678-1016 |
| Cow position: | chrX:13826933-13826595 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 101, 124 |
| Conread position: | 689-1082 |
| Cow position: | chrX:29045318-29044923 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 726-1082 |
| Cow position: | chrX:25309701-25310059 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 130, 123 |
| Conread position: | 729-1083 |
| Cow position: | chrX:25325605-25325249 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 341, 0 |
Show alignments to all cow chromosomes.