Cow genome map
| Conread name: | Ss1.1-Mixc-0033e05.5 |
| Conread position: | 129-870 |
| Cow position: | chr23:838356-837602 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 201-715 |
| Cow position: | chr23:865275-864760 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 304 |
| Conread position: | 223-640 |
| Cow position: | chr23:856551-856140 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 191, 84 |
| Conread position: | 233-867 |
| Cow position: | chr23:823706-823060 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 332 |
| Conread position: | 236-640 |
| Cow position: | chr23:859598-859201 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 258, 24 |
| Conread position: | 250-715 |
| Cow position: | chr23:859678-859201 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 250-912 |
| Cow position: | chr23:838126-837473 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 59 |
| Conread position: | 251-523 |
| Cow position: | chr23:801118-800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 269 |
| Conread position: | 252-673 |
| Cow position: | chr23:813926-813488 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 252-839 |
| Cow position: | chr23:876550-875954 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 310 |
| Conread position: | 252-869 |
| Cow position: | chr23:882442-881849 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 252-869 |
| Cow position: | chr23:889410-888792 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 308 |
| Conread position: | 252-912 |
| Cow position: | chr23:852064-851395 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 278 |
| Conread position: | 252-912 |
| Cow position: | chr23:859781-859142 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 259 |
| Conread position: | 262-490 |
| Cow position: | chr23:788970-788733 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 262-523 |
| Cow position: | chr23:788997-788745 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 262-744 |
| Cow position: | chr23:775816-776289 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 264-523 |
| Cow position: | chr23:856408-856152 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 266-580 |
| Cow position: | chr23:856466-856140 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 91, 98 |
| Conread position: | 278-857 |
| Cow position: | chr23:781654-782218 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 369 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 216, 29 |
| Conread position: | 296-613 |
| Cow position: | chr23:856466-856152 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 12 |
| Conread position: | 309-640 |
| Cow position: | chr23:789055-788733 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 339-582 |
| Cow position: | chr23:801089-800846 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 195, 190 |
| Conread position: | 351-657 |
| Cow position: | chr23:856456-856153 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 353-642 |
| Cow position: | chr23:789026-788746 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 362-894 |
| Cow position: | chr23:781788-782297 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 335 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 363-715 |
| Cow position: | chr23:856490-856140 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 366-842 |
| Cow position: | chr23:781721-782176 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 305 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 196, 91 |
| Conread position: | 367-598 |
| Cow position: | chr23:801076-800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 217, 227 |
| Conread position: | 367-863 |
| Cow position: | chr23:775801-776288 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 368-857 |
| Cow position: | chr23:876524-876038 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 368-883 |
| Cow position: | chr23:882416-881904 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 371-811 |
| Cow position: | chr23:813867-813426 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 371-912 |
| Cow position: | chr23:876491-875941 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 371-912 |
| Cow position: | chr23:882383-881833 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 377-613 |
| Cow position: | chr23:801081-800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 377-842 |
| Cow position: | chr23:781977-782413 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 383-777 |
| Cow position: | chr23:789071-788689 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 349, 101 |
| Conread position: | 398-732 |
| Cow position: | chr23:856481-856153 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 398-912 |
| Cow position: | chr23:823568-823045 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 135 |
| Conread position: | 411-912 |
| Cow position: | chr23:813902-813418 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 80 |
| Conread position: | 413-912 |
| Cow position: | chr23:865209-864701 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 81 |
| Conread position: | 422-657 |
| Cow position: | chr23:801081-800846 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 187, 182 |
| Conread position: | 427-688 |
| Cow position: | chr23:801106-800845 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 427-715 |
| Cow position: | chr23:801123-800833 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 442-883 |
| Cow position: | chr23:865210-864772 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 457-890 |
| Cow position: | chr23:766522-766943 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 149, 67 |
| Conread position: | 458-869 |
| Cow position: | chr23:856496-856097 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 482-730 |
| Cow position: | chr23:801081-800833 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 502-732 |
| Cow position: | chr23:801076-800846 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 182, 177 |
| Conread position: | 503-912 |
| Cow position: | chr23:856496-856081 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 24 |
| Conread position: | 532-762 |
| Cow position: | chr23:801076-800846 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 143, 148 |
| Conread position: | 533-883 |
| Cow position: | chr23:856496-856152 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 17 |
| Conread position: | 536-912 |
| Cow position: | chr23:789053-788674 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 84 |
| Conread position: | 561-851 |
| Cow position: | chr23:813917-813627 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 564-868 |
| Cow position: | chr23:801089-800788 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 195, 190 |
| Conread position: | 589-912 |
| Cow position: | chr23:801094-800774 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 696-912 |
| Cow position: | chr23:785067-784839 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 51 |
Show alignments to all cow chromosomes.