Cow genome map
| Conread name: | Ss1.1-Mixc-0034g09.3 |
| Conread position: | 125-277 |
| Cow position: | chr1:56143784-56143637 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 128-277 |
| Cow position: | chr1:40684151-40684005 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 130-277 |
| Cow position: | chr1:69921884-69921740 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 130-277 |
| Cow position: | chr1:102434485-102434343 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 137-274 |
| Cow position: | chr1:25179470-25179335 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 138-277 |
| Cow position: | chr1:57568492-57568630 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 138-277 |
| Cow position: | chr1:73070493-73070360 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 138-277 |
| Cow position: | chr1:76544981-76544841 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 138-277 |
| Cow position: | chr1:99913979-99914118 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 151-270 |
| Cow position: | chr1:58178417-58178300 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 152-248 |
| Cow position: | chr1:85882569-85882665 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 152-263 |
| Cow position: | chr1:20829460-20829570 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-269 |
| Cow position: | chr1:53199121-53199238 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 152-270 |
| Cow position: | chr1:67834570-67834453 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-271 |
| Cow position: | chr1:13450775-13450893 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-271 |
| Cow position: | chr1:82912573-82912454 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 152-272 |
| Cow position: | chr1:5355697-5355816 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr1:8554902-8555018 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr1:11291537-11291418 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr1:21087984-21088103 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr1:29034867-29034984 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr1:56723729-56723848 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr1:65386903-65387022 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:6194810-6194929 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:9259067-9259191 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:17012168-17012044 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:21999380-21999259 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:26518312-26518191 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:28873651-28873775 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:31397261-31397387 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 152-277 |
| Cow position: | chr1:33551501-33551621 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:33712665-33712789 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:33851856-33851980 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:39544340-39544461 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:40053925-40054049 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:40574784-40574908 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:42737029-42737153 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:44044353-44044477 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:47541203-47541327 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:55777155-55777279 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:56164120-56164244 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:57424269-57424146 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:58883491-58883368 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:60339873-60339994 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:62244069-62243945 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:63605202-63605081 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:66999586-66999707 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:68606967-68606846 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:69403557-69403681 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:71562002-71561878 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:76752075-76751951 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:80358610-80358486 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:82565074-82565198 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:82653236-82653360 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:85792252-85792373 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:86547568-86547447 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:86698641-86698520 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:89426144-89426268 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:91750892-91750768 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:91892545-91892421 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:93855095-93855214 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:94660249-94660370 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr1:95239939-95240063 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-279 |
| Cow position: | chr1:48246408-48246529 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 153-277 |
| Cow position: | chr1:52358700-52358577 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 155-277 |
| Cow position: | chr1:12061641-12061520 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr1:17035985-17035864 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr1:24443748-24443627 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr1:29362871-29362992 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr1:33896316-33896437 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr1:57657372-57657493 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr1:59209577-59209455 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 107, 9 |
| Conread position: | 155-277 |
| Cow position: | chr1:79456393-79456275 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 164-277 |
| Cow position: | chr1:30534436-30534323 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-277 |
| Cow position: | chr1:56490433-56490546 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-277 |
| Cow position: | chr1:72186297-72186184 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-277 |
| Cow position: | chr1:17941199-17941089 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 167-274 |
| Cow position: | chr1:31365502-31365398 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 167-280 |
| Cow position: | chr1:55321556-55321440 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 168-277 |
| Cow position: | chr1:76621096-76620987 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 321-518 |
| Cow position: | chr1:42057682-42057878 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 321-529 |
| Cow position: | chr1:79637839-79637636 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 6, 0 |
Show alignments to all cow chromosomes.