Cow genome map
| Conread name: | Ss1.1-Mixc-0034g09.3 |
| Conread position: | 128-277 |
| Cow position: | chr16:407223-407076 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 130-272 |
| Cow position: | chr16:9930747-9930887 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 136-269 |
| Cow position: | chr16:37456210-37456077 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 137-277 |
| Cow position: | chr16:23252689-23252551 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 138-277 |
| Cow position: | chr16:1567634-1567495 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 151-270 |
| Cow position: | chr16:5484153-5484269 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 151-277 |
| Cow position: | chr16:21185450-21185572 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-259 |
| Cow position: | chr16:31832460-31832566 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-264 |
| Cow position: | chr16:6943437-6943548 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr16:32567-32685 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-274 |
| Cow position: | chr16:10203605-10203484 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-274 |
| Cow position: | chr16:43897437-43897318 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:1432024-1432148 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:2411133-2411009 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:2727453-2727329 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:4302506-4302382 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:4479149-4479025 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:5661677-5661801 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:8816271-8816147 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:10375765-10375641 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:10438070-10438194 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:11283143-11283267 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:12538091-12537967 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:14665978-14665855 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:15476677-15476799 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 152-277 |
| Cow position: | chr16:15493064-15493185 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:15566576-15566700 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:25257770-25257894 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:25341792-25341914 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:25441461-25441584 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:25457630-25457506 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:26374427-26374549 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:28170538-28170414 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:28197844-28197720 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:28377051-28377175 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:28471268-28471144 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr16:29046856-29046980 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-279 |
| Cow position: | chr16:25188463-25188584 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 155-272 |
| Cow position: | chr16:24105540-24105656 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr16:31592076-31591955 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr16:53046185-53046306 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 163-272 |
| Cow position: | chr16:49234986-49234878 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 163-277 |
| Cow position: | chr16:23808265-23808379 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-272 |
| Cow position: | chr16:43852274-43852169 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 164-277 |
| Cow position: | chr16:2483295-2483182 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-277 |
| Cow position: | chr16:23983154-23983267 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-277 |
| Cow position: | chr16:40296332-40296219 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-277 |
| Cow position: | chr16:41166918-41166813 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 171-277 |
| Cow position: | chr16:19152028-19151922 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-277 |
| Cow position: | chr16:23536035-23535932 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 321-520 |
| Cow position: | chr16:15368647-15368846 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 324-526 |
| Cow position: | chr16:32934351-32934551 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 326-527 |
| Cow position: | chr16:16687132-16687334 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 59 |
Show alignments to all cow chromosomes.