Cow genome map
| Conread name: | Ss1.1-Mixc-0034g09.3 |
| Conread position: | 128-277 |
| Cow position: | chr6:39908992-39909141 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 130-277 |
| Cow position: | chr6:185316-185169 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 135-273 |
| Cow position: | chr6:40554108-40553969 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 136-271 |
| Cow position: | chr6:13317029-13316896 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 138-277 |
| Cow position: | chr6:32330048-32329909 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 138-277 |
| Cow position: | chr6:38233310-38233447 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 138-278 |
| Cow position: | chr6:15280077-15279941 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 152-270 |
| Cow position: | chr6:28703829-28703712 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-270 |
| Cow position: | chr6:59918581-59918464 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-270 |
| Cow position: | chr6:65928460-65928575 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 152-272 |
| Cow position: | chr6:44032282-44032401 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:185979-185855 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:330976-330852 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:702403-702527 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:914126-914249 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:2375191-2375315 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:3888988-3888868 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:11724617-11724493 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:12665829-12665705 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:13847518-13847640 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:13944397-13944521 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:15140689-15140568 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:16052370-16052494 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:17046550-17046674 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:17597800-17597677 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:26670377-26670254 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:27170070-27170191 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:27529511-27529391 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:28491075-28490951 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:30274682-30274563 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:34892509-34892386 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:35876219-35876099 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:36526545-36526666 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:40275578-40275702 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:43618205-43618329 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:43999551-43999675 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:44150066-44149942 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:51086435-51086559 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:51714195-51714314 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr6:68027280-68027404 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-279 |
| Cow position: | chr6:1822137-1822011 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-279 |
| Cow position: | chr6:13104547-13104673 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 155-271 |
| Cow position: | chr6:40252154-40252269 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-272 |
| Cow position: | chr6:10499231-10499115 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 155-272 |
| Cow position: | chr6:24322888-24322772 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 155-272 |
| Cow position: | chr6:28063828-28063944 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-272 |
| Cow position: | chr6:69221717-69221601 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 155-277 |
| Cow position: | chr6:1411450-1411329 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr6:7140969-7140848 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr6:8760806-8760685 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr6:40326189-40326069 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr6:52693521-52693642 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 163-272 |
| Cow position: | chr6:3048766-3048657 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-277 |
| Cow position: | chr6:20560606-20560492 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-277 |
| Cow position: | chr6:24239560-24239671 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 164-273 |
| Cow position: | chr6:40813165-40813056 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-277 |
| Cow position: | chr6:5949273-5949160 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-277 |
| Cow position: | chr6:21973158-21973270 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 164-277 |
| Cow position: | chr6:29311999-29312112 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-271 |
| Cow position: | chr6:43793206-43793101 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 167-272 |
| Cow position: | chr6:28105349-28105244 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-277 |
| Cow position: | chr6:28275487-28275597 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-272 |
| Cow position: | chr6:32073405-32073302 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 275-535 |
| Cow position: | chr6:4905214-4904947 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 119 |
| Conread position: | 326-539 |
| Cow position: | chr6:22852925-22852715 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 58 |
Show alignments to all cow chromosomes.