Cow genome map
| Conread name: | Ss1.1-Mixc-0034g09.3 |
| Conread position: | 128-277 |
| Cow position: | chr9:59426166-59426313 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 130-272 |
| Cow position: | chr9:5514822-5514961 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 130-277 |
| Cow position: | chr9:3998408-3998555 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 130-277 |
| Cow position: | chr9:27934484-27934631 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 130-277 |
| Cow position: | chr9:28022201-28022348 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 137-277 |
| Cow position: | chr9:59454863-59454722 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 138-277 |
| Cow position: | chr9:4532901-4533040 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 138-277 |
| Cow position: | chr9:18509391-18509255 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 138-277 |
| Cow position: | chr9:59482395-59482257 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 140-277 |
| Cow position: | chr9:10936987-10937122 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 151-274 |
| Cow position: | chr9:29027780-29027661 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 152-271 |
| Cow position: | chr9:28678392-28678511 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 113, 12 |
| Conread position: | 152-272 |
| Cow position: | chr9:4943393-4943274 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr9:13476461-13476342 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr9:17063968-17063849 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-272 |
| Cow position: | chr9:25187525-25187640 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-274 |
| Cow position: | chr9:37162389-37162273 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-274 |
| Cow position: | chr9:51181765-51181645 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:780385-780261 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:1251577-1251454 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:1980410-1980533 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:3005825-3005704 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:6249719-6249843 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:6830085-6829959 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 152-277 |
| Cow position: | chr9:16176191-16176315 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:25035426-25035302 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:28440227-28440351 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:30672789-30672910 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:31807990-31808114 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:42569325-42569446 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:45873765-45873886 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:50791133-50791255 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:51211101-51211225 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:59536516-59536640 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 152-277 |
| Cow position: | chr9:60277597-60277472 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 152-277 |
| Cow position: | chr9:64018042-64017919 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-279 |
| Cow position: | chr9:36724921-36725047 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 152-285 |
| Cow position: | chr9:32969370-32969502 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 154-272 |
| Cow position: | chr9:240119-240002 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 9 |
| Conread position: | 155-272 |
| Cow position: | chr9:222106-221990 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-272 |
| Cow position: | chr9:40223711-40223827 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 155-273 |
| Cow position: | chr9:10322228-10322344 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr9:3543267-3543388 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr9:20308727-20308609 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-277 |
| Cow position: | chr9:42310110-42310231 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 155-279 |
| Cow position: | chr9:47002618-47002741 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 164-272 |
| Cow position: | chr9:27782650-27782756 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 164-272 |
| Cow position: | chr9:30488004-30488112 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-277 |
| Cow position: | chr9:22654003-22654116 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-277 |
| Cow position: | chr9:29628316-29628203 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-277 |
| Cow position: | chr9:30827110-30827220 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 164-277 |
| Cow position: | chr9:59173716-59173602 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 167-277 |
| Cow position: | chr9:3566402-3566292 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-277 |
| Cow position: | chr9:27035116-27035226 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-277 |
| Cow position: | chr9:9013536-9013645 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-277 |
| Cow position: | chr9:25022735-25022626 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 168-277 |
| Cow position: | chr9:31064867-31064976 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 321-529 |
| Cow position: | chr9:3802467-3802675 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 31, 67 |
Show alignments to all cow chromosomes.