Cow genome map

Conread name: Ss1.1-Mixc-0037,b17.5

Conread position: 1-426
Cow position: chr14:663487-663064 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 268
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 224, 14

Conread position: 1-755
Cow position: chr14:3061406-3060652 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 138

Conread position: 6-480
Cow position: chr14:680815-681288 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 219

Conread position: 6-692
Cow position: chr14:680563-681249 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 460, 451

Conread position: 6-752
Cow position: chr14:447509-448255 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 310

Conread position: 8-837
Cow position: chr14:3080504-3079675 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 208

Conread position: 8-844
Cow position: chr14:3061651-3060815 (view UCSC Genome Browser custom track)
Alignm length: 839
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 586, 592

Conread position: 8-850
Cow position: chr14:3061735-3060893 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 536, 531

Conread position: 9-259
Cow position: chr14:3127511-3127260 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 163
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 241, 0

Conread position: 9-427
Cow position: chr14:25895961-25896379 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 258
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 133, 128

Conread position: 9-489
Cow position: chr14:433901-434381 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 382

Conread position: 9-557
Cow position: chr14:433817-434365 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 388

Conread position: 9-660
Cow position: chr14:3127931-3127280 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 462, 449

Conread position: 9-762
Cow position: chr14:3080419-3079666 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 181

Conread position: 9-837
Cow position: chr14:25895457-25896285 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 181

Conread position: 10-844
Cow position: chr14:25895038-25895872 (view UCSC Genome Browser custom track)
Alignm length: 840
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 221

Conread position: 11-850
Cow position: chr14:680232-681071 (view UCSC Genome Browser custom track)
Alignm length: 842
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 576, 589

Conread position: 14-474
Cow position: chr14:25895882-25896342 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-557
Cow position: chr14:25836647-25837190 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 325
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 14-815
Cow position: chr14:25876501-25877300 (view UCSC Genome Browser custom track)
Alignm length: 805
Alignm identity: 448
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 544, 17

Conread position: 14-841
Cow position: chr14:25894958-25895785 (view UCSC Genome Browser custom track)
Alignm length: 832
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 203

Conread position: 15-841
Cow position: chr14:3081001-3080175 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 103

Conread position: 18-250
Cow position: chr14:434162-434394 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 19-342
Cow position: chr14:434079-434402 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 261

Conread position: 19-803
Cow position: chr14:25895551-25896335 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 199

Conread position: 27-333
Cow position: chr14:3127577-3127271 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 27-334
Cow position: chr14:3156175-3156482 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 27-841
Cow position: chr14:25895391-25896207 (view UCSC Genome Browser custom track)
Alignm length: 822
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 107

Conread position: 27-844
Cow position: chr14:3080653-3079836 (view UCSC Genome Browser custom track)
Alignm length: 821
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 194

Conread position: 27-844
Cow position: chr14:3155518-3156320 (view UCSC Genome Browser custom track)
Alignm length: 822
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 194

Conread position: 28-419
Cow position: chr14:3156092-3156483 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 28-557
Cow position: chr14:3155924-3156453 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 28-761
Cow position: chr14:3127996-3127263 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 412

Conread position: 28-798
Cow position: chr14:680501-681271 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 201

Conread position: 28-812
Cow position: chr14:25835737-25836521 (view UCSC Genome Browser custom track)
Alignm length: 791
Alignm identity: 451
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 55, 47

Conread position: 28-815
Cow position: chr14:25859966-25860753 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 28

Conread position: 28-827
Cow position: chr14:25876681-25877480 (view UCSC Genome Browser custom track)
Alignm length: 805
Alignm identity: 469
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 27, 39

Conread position: 28-828
Cow position: chr14:3061463-3060663 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 191

Conread position: 28-832
Cow position: chr14:3155435-3156224 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 277

Conread position: 28-837
Cow position: chr14:3080736-3079927 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 405

Conread position: 28-837
Cow position: chr14:3080820-3080011 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 447, 451

Conread position: 28-837
Cow position: chr14:3128080-3127271 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 559, 572

Conread position: 28-837
Cow position: chr14:3128164-3127355 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 509, 516

Conread position: 28-837
Cow position: chr14:3155687-3156481 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 566, 153

Conread position: 28-837
Cow position: chr14:25836325-25837134 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 457
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 546, 572

Conread position: 28-842
Cow position: chr14:25877017-25877831 (view UCSC Genome Browser custom track)
Alignm length: 819
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 28

Conread position: 28-844
Cow position: chr14:25895224-25896040 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 28

Conread position: 34-422
Cow position: chr14:25860392-25860780 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 232
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 33

Conread position: 34-556
Cow position: chr14:3100970-3100451 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 299
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 427, 5

Conread position: 39-423
Cow position: chr14:434015-434400 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 178

Conread position: 51-798
Cow position: chr14:25859233-25859980 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 423
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 258, 269

Conread position: 54-436
Cow position: chr14:3100869-3100487 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 230
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 318, 337

Conread position: 57-806
Cow position: chr14:3101113-3100369 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 437
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 348, 56

Conread position: 63-837
Cow position: chr14:3061764-3060990 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 26

Conread position: 64-844
Cow position: chr14:3061511-3060731 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 126

Conread position: 65-828
Cow position: chr14:680370-681133 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 332

Conread position: 67-462
Cow position: chr14:25910896-25911291 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 238
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 240, 253

Conread position: 67-564
Cow position: chr14:25895851-25896348 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 123

Conread position: 67-669
Cow position: chr14:433791-434393 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 14

Conread position: 72-312
Cow position: chr14:176-416 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 162
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 60

Conread position: 75-828
Cow position: chr14:25894935-25895688 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 52

Conread position: 77-836
Cow position: chr14:25859427-25860186 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 424
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 506, 484

Conread position: 84-462
Cow position: chr14:663488-663111 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 242
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 214, 14

Conread position: 85-828
Cow position: chr14:3155408-3156136 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 133

Conread position: 85-837
Cow position: chr14:680222-680974 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 394

Conread position: 88-671
Cow position: chr14:3155900-3156483 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 348
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 512, 498

Conread position: 88-809
Cow position: chr14:25836049-25836770 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 414
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 124, 132

Conread position: 118-837
Cow position: chr14:3128158-3127439 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 469, 482

Conread position: 129-762
Cow position: chr14:433769-434402 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 36

Conread position: 136-830
Cow position: chr14:447555-448249 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 268

Conread position: 165-333
Cow position: chr14:185-353 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 32, 25

Conread position: 169-841
Cow position: chr14:3061742-3061070 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 229

Conread position: 172-754
Cow position: chr14:3155900-3156482 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 353
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 48, 40

Conread position: 194-837
Cow position: chr14:3128166-3127523 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 210

Conread position: 234-804
Cow position: chr14:25894926-25895496 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 245

Conread position: 234-837
Cow position: chr14:433790-434393 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 15

Conread position: 235-837
Cow position: chr14:447570-448172 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 251-662
Cow position: chr14:3155406-3155817 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 259
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 224, 228

Conread position: 251-850
Cow position: chr14:680220-680819 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 153

Conread position: 260-631
Cow position: chr14:663480-663110 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 228
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 117, 6

Conread position: 318-837
Cow position: chr14:447569-448088 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 326
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 80, 73

Conread position: 319-841
Cow position: chr14:433791-434313 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 21

Conread position: 342-841
Cow position: chr14:447509-448008 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 305
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 245, 258

Conread position: 361-839
Cow position: chr14:3155921-3156399 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 288
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 110, 92

Conread position: 420-841
Cow position: chr14:3061743-3061322 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 269
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 167, 180

Conread position: 421-798
Cow position: chr14:663488-663111 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 236
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 124, 119

Conread position: 448-842
Cow position: chr14:3155435-3155829 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 246
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 139, 152

Conread position: 482-850
Cow position: chr14:3061768-3061397 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 236
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 8, 121

Conread position: 483-837
Cow position: chr14:25894923-25895277 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 216
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 120, 108

Conread position: 499-850
Cow position: chr14:680216-680567 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 223
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 103, 75

Conread position: 506-844
Cow position: chr14:433810-434148 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 81, 94

Conread position: 508-850
Cow position: chr14:3155411-3155753 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 211
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 79, 100

Conread position: 512-837
Cow position: chr14:663480-663156 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 201
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 77, 7

Conread position: 599-844
Cow position: chr14:25894955-25895200 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 155
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 613-841
Cow position: chr14:3155432-3155660 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 154
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.