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Cow genome map

           
Conread name:
           
Ss1.1-Mixc-0037,b17.5
        

               
Conread position:
               
1-279
               

               
Cow position:
               
chr18:56391095-56390816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
267, 0
               

               
Conread position:
               
1-555
               

               
Cow position:
               
chr18:56391431-56390877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 296
               

               
Conread position:
               
1-714
               

               
Cow position:
               
chr18:56329599-56328886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
719
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
434, 439
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr18:44817738-44818108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr18:44944377-44944609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 54
               

               
Conread position:
               
6-249
               

               
Cow position:
               
chr18:56391897-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-327
               

               
Cow position:
               
chr18:47846344-47846023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
229, 222
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr18:54668690-54668348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 66
               

               
Conread position:
               
6-839
               

               
Cow position:
               
chr18:22844196-22843351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
851
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 118
               

               
Conread position:
               
8-324
               

               
Cow position:
               
chr18:42724244-42723929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
8-389
               

               
Cow position:
               
chr18:56494103-56494484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-416
               

               
Cow position:
               
chr18:55066767-55066359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-828
               

               
Cow position:
               
chr18:53586824-53586004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
825
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
394, 374
               

               
Conread position:
               
8-839
               

               
Cow position:
               
chr18:51400287-51401118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
835
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
466, 471
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr18:56316729-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
242, 250
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr18:56391171-56390818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
213, 203
               

               
Conread position:
               
9-434
               

               
Cow position:
               
chr18:55067018-55066593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
9-436
               

               
Cow position:
               
chr18:55497446-55497018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 208
               

               
Conread position:
               
9-461
               

               
Cow position:
               
chr18:53610207-53609755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
203, 212
               

               
Conread position:
               
9-464
               

               
Cow position:
               
chr18:49022738-49023192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
389, 395
               

               
Conread position:
               
9-474
               

               
Cow position:
               
chr18:49032618-49032153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 209
               

               
Conread position:
               
9-768
               

               
Cow position:
               
chr18:22844361-22843598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
773
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 181
               

               
Conread position:
               
9-831
               

               
Cow position:
               
chr18:53635868-53635046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
825
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
578, 591
               

               
Conread position:
               
9-836
               

               
Cow position:
               
chr18:56128297-56129124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
830
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
578, 591
               

               
Conread position:
               
9-837
               

               
Cow position:
               
chr18:56329843-56329015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
834
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
9-841
               

               
Cow position:
               
chr18:56330011-56329179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
839
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
426, 431
               

               
Conread position:
               
9-844
               

               
Cow position:
               
chr18:22844277-22843430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
850
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 299
               

               
Conread position:
               
9-844
               

               
Cow position:
               
chr18:49033206-49032371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
841
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
426, 431
               

               
Conread position:
               
9-844
               

               
Cow position:
               
chr18:56316225-56317060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
842
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 220
               

               
Conread position:
               
15-462
               

               
Cow position:
               
chr18:42724406-42723959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
15-632
               

               
Cow position:
               
chr18:54668933-54668314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
72, 89
               

               
Conread position:
               
18-211
               

               
Cow position:
               
chr18:54669656-54669463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-248
               

               
Cow position:
               
chr18:54664102-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
18-360
               

               
Cow position:
               
chr18:56391969-56391625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
320, 0
               

               
Conread position:
               
18-683
               

               
Cow position:
               
chr18:56391498-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 194
               

               
Conread position:
               
19-462
               

               
Cow position:
               
chr18:55497520-55497077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 200
               

               
Conread position:
               
19-467
               

               
Cow position:
               
chr18:47846499-47846051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
257, 261
               

               
Conread position:
               
19-545
               

               
Cow position:
               
chr18:50848521-50849047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
19-546
               

               
Cow position:
               
chr18:22843844-22843308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
144, 174
               

               
Conread position:
               
19-552
               

               
Cow position:
               
chr18:40306607-40307140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
212, 204
               

               
Conread position:
               
19-554
               

               
Cow position:
               
chr18:42724486-42723951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 43
               

               
Conread position:
               
19-595
               

               
Cow position:
               
chr18:44817843-44818435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
271, 284
               

               
Conread position:
               
19-767
               

               
Cow position:
               
chr18:56391581-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 383
               

               
Conread position:
               
27-170
               

               
Cow position:
               
chr18:56328985-56328842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-336
               

               
Cow position:
               
chr18:56267434-56267125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-462
               

               
Cow position:
               
chr18:47846575-47846140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
27-480
               

               
Cow position:
               
chr18:14453994-14453541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
27-483
               

               
Cow position:
               
chr18:56329321-56328865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
408, 413
               

               
Conread position:
               
27-795
               

               
Cow position:
               
chr18:52012333-52011565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 201
               

               
Conread position:
               
27-805
               

               
Cow position:
               
chr18:49022338-49023114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
208, 202
               

               
Conread position:
               
28-254
               

               
Cow position:
               
chr18:56329068-56328842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-292
               

               
Cow position:
               
chr18:43048701-43048437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-409
               

               
Cow position:
               
chr18:49021678-49022059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
313, 307
               

               
Conread position:
               
28-452
               

               
Cow position:
               
chr18:49032515-49032091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
412, 406
               

               
Conread position:
               
28-461
               

               
Cow position:
               
chr18:33064491-33064058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 99
               

               
Conread position:
               
28-516
               

               
Cow position:
               
chr18:56316580-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
369, 376
               

               
Conread position:
               
28-524
               

               
Cow position:
               
chr18:49032683-49032187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
445, 451
               

               
Conread position:
               
28-539
               

               
Cow position:
               
chr18:40306364-40306875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
268, 277
               

               
Conread position:
               
28-540
               

               
Cow position:
               
chr18:42693853-42693340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 104
               

               
Conread position:
               
28-546
               

               
Cow position:
               
chr18:55497595-55497077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 196
               

               
Conread position:
               
28-551
               

               
Cow position:
               
chr18:42724561-42724038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr18:42744522-42743993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
437, 430
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr18:51400559-51401088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
454, 448
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr18:53610272-53609743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 196
               

               
Conread position:
               
28-557
               

               
Cow position:
               
chr18:56329404-56328875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 185
               

               
Conread position:
               
28-683
               

               
Cow position:
               
chr18:55497679-55497022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 373
               

               
Conread position:
               
28-685
               

               
Cow position:
               
chr18:53635681-53635025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 421
               

               
Conread position:
               
28-707
               

               
Cow position:
               
chr18:53610356-53609676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 354
               

               
Conread position:
               
28-767
               

               
Cow position:
               
chr18:56316328-56317067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
439, 416
               

               
Conread position:
               
28-828
               

               
Cow position:
               
chr18:42744606-42743806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
808
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
28-828
               

               
Cow position:
               
chr18:53586972-53586172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
805
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
181, 203
               

               
Conread position:
               
28-830
               

               
Cow position:
               
chr18:41949321-41948519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
809
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
28-832
               

               
Cow position:
               
chr18:53636017-53635213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-832
               

               
Cow position:
               
chr18:56128148-56128952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:49033019-49032210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
559, 572
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:49033103-49032294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
439, 430
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:49033271-49032462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 376
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:56316076-56316885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 375
               

               
Conread position:
               
28-837
               

               
Cow position:
               
chr18:56329908-56329099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
520
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
566, 572
               

               
Conread position:
               
28-841
               

               
Cow position:
               
chr18:56330160-56329347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
817
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 374
               

               
Conread position:
               
30-809
               

               
Cow position:
               
chr18:51400141-51400920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr18:56329149-56328848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
32-457
               

               
Cow position:
               
chr18:56128739-56129164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 394
               

               
Conread position:
               
32-563
               

               
Cow position:
               
chr18:42792338-42792870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 366
               

               
Conread position:
               
32-788
               

               
Cow position:
               
chr18:53610437-53609681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 349
               

               
Conread position:
               
39-797
               

               
Cow position:
               
chr18:44398401-44397643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
422, 418
               

               
Conread position:
               
39-837
               

               
Cow position:
               
chr18:52012405-52011607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 342
               

               
Conread position:
               
50-442
               

               
Cow position:
               
chr18:56329212-56328823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
50-837
               

               
Cow position:
               
chr18:56330054-56329267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
791
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 168
               

               
Conread position:
               
51-684
               

               
Cow position:
               
chr18:56316435-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 178
               

               
Conread position:
               
52-462
               

               
Cow position:
               
chr18:1418137-1418547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
383, 388
               

               
Conread position:
               
52-708
               

               
Cow position:
               
chr18:56128508-56129163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 254
               

               
Conread position:
               
53-825
               

               
Cow position:
               
chr18:53636075-53635304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
382, 14
               

               
Conread position:
               
54-546
               

               
Cow position:
               
chr18:50848809-50849300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
54-791
               

               
Cow position:
               
chr18:42675183-42674447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
245, 13
               

               
Conread position:
               
54-836
               

               
Cow position:
               
chr18:56329631-56328848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
787
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 387
               

               
Conread position:
               
56-817
               

               
Cow position:
               
chr18:53610495-53609735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 11
               

               
Conread position:
               
56-836
               

               
Cow position:
               
chr18:40306224-40307004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 70
               

               
Conread position:
               
57-462
               

               
Cow position:
               
chr18:33064042-33063637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
155, 161
               

               
Conread position:
               
57-549
               

               
Cow position:
               
chr18:1418058-1418550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
58-553
               

               
Cow position:
               
chr18:50246050-50246545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
156, 161
               

               
Conread position:
               
58-837
               

               
Cow position:
               
chr18:33064377-33063598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
786
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
154, 162
               

               
Conread position:
               
61-462
               

               
Cow position:
               
chr18:33064542-33064141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
374, 379
               

               
Conread position:
               
61-824
               

               
Cow position:
               
chr18:42837876-42837113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
496, 490
               

               
Conread position:
               
63-376
               

               
Cow position:
               
chr18:51367534-51367220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
64-467
               

               
Cow position:
               
chr18:56493991-56494394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
64-539
               

               
Cow position:
               
chr18:52428284-52428759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 63
               

               
Conread position:
               
64-841
               

               
Cow position:
               
chr18:52012462-52011687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
65-539
               

               
Cow position:
               
chr18:50281822-50282296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
309, 314
               

               
Conread position:
               
65-539
               

               
Cow position:
               
chr18:52433466-52433940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
78, 71
               

               
Conread position:
               
65-753
               

               
Cow position:
               
chr18:47846705-47846017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 87
               

               
Conread position:
               
66-356
               

               
Cow position:
               
chr18:44818619-44818908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
279, 0
               

               
Conread position:
               
66-423
               

               
Cow position:
               
chr18:56267479-56267122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
66-455
               

               
Cow position:
               
chr18:50281907-50282296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
170, 163
               

               
Conread position:
               
66-475
               

               
Cow position:
               
chr18:42792457-42792866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
66-546
               

               
Cow position:
               
chr18:56247748-56247276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
226, 238
               

               
Conread position:
               
66-816
               

               
Cow position:
               
chr18:42791953-42792703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
338, 331
               

               
Conread position:
               
66-828
               

               
Cow position:
               
chr18:42791785-42792547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
534, 499
               

               
Conread position:
               
67-371
               

               
Cow position:
               
chr18:50030749-50030442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
67-409
               

               
Cow position:
               
chr18:50281992-50282334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
139, 160
               

               
Conread position:
               
67-433
               

               
Cow position:
               
chr18:1418236-1418602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
67-479
               

               
Cow position:
               
chr18:50246311-50246723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
67-546
               

               
Cow position:
               
chr18:50246227-50246706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
233, 245
               

               
Conread position:
               
67-546
               

               
Cow position:
               
chr18:50271527-50272006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 62
               

               
Conread position:
               
67-551
               

               
Cow position:
               
chr18:52447678-52448162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
67-557
               

               
Cow position:
               
chr18:52428371-52428861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 160
               

               
Conread position:
               
67-557
               

               
Cow position:
               
chr18:52433552-52434042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
240, 250
               

               
Conread position:
               
67-798
               

               
Cow position:
               
chr18:42791702-42792433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
520, 534
               

               
Conread position:
               
67-798
               

               
Cow position:
               
chr18:50848401-50849132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
368, 373
               

               
Conread position:
               
67-803
               

               
Cow position:
               
chr18:52447090-52447826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
240, 250
               

               
Conread position:
               
67-836
               

               
Cow position:
               
chr18:50848485-50849254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
774
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
156, 168
               

               
Conread position:
               
67-837
               

               
Cow position:
               
chr18:49033316-49032546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
774
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 162
               

               
Conread position:
               
70-555
               

               
Cow position:
               
chr18:14454035-14453550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
225, 231
               

               
Conread position:
               
70-557
               

               
Cow position:
               
chr18:42675336-42674849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
71-557
               

               
Cow position:
               
chr18:1417988-1418474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
364, 369
               

               
Conread position:
               
75-795
               

               
Cow position:
               
chr18:56128447-56129166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 316
               

               
Conread position:
               
76-433
               

               
Cow position:
               
chr18:43048737-43048380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
76-825
               

               
Cow position:
               
chr18:56128112-56128861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 364
               

               
Conread position:
               
77-545
               

               
Cow position:
               
chr18:43175028-43174560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
135, 144
               

               
Conread position:
               
79-631
               

               
Cow position:
               
chr18:50281752-50282304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
79-766
               

               
Cow position:
               
chr18:42724594-42723907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 111
               

               
Conread position:
               
79-800
               

               
Cow position:
               
chr18:50059629-50058908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
730
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
133, 142
               

               
Conread position:
               
79-801
               

               
Cow position:
               
chr18:50059293-50058571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
79-828
               

               
Cow position:
               
chr18:55067116-55066367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
133, 144
               

               
Conread position:
               
79-841
               

               
Cow position:
               
chr18:50848329-50849091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
151, 133
               

               
Conread position:
               
80-798
               

               
Cow position:
               
chr18:33064943-33064225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
272, 276
               

               
Conread position:
               
81-837
               

               
Cow position:
               
chr18:50245989-50246745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 60
               

               
Conread position:
               
82-827
               

               
Cow position:
               
chr18:41949351-41948606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
751
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
216, 220
               

               
Conread position:
               
83-345
               

               
Cow position:
               
chr18:54664083-54664345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 107
               

               
Conread position:
               
83-848
               

               
Cow position:
               
chr18:22844371-22843598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 175
               

               
Conread position:
               
85-844
               

               
Cow position:
               
chr18:56316049-56316808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
502, 523
               

               
Conread position:
               
88-809
               

               
Cow position:
               
chr18:42744714-42743993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 131
               

               
Conread position:
               
88-844
               

               
Cow position:
               
chr18:56330184-56329428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 128
               

               
Conread position:
               
89-828
               

               
Cow position:
               
chr18:49033378-49032639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
498, 511
               

               
Conread position:
               
96-754
               

               
Cow position:
               
chr18:55497695-55497037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 205
               

               
Conread position:
               
103-417
               

               
Cow position:
               
chr18:56391968-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
109, 114
               

               
Conread position:
               
104-558
               

               
Cow position:
               
chr18:56267609-56267155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
74, 68
               

               
Conread position:
               
112-830
               

               
Cow position:
               
chr18:56391572-56390854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 292
               

               
Conread position:
               
150-844
               

               
Cow position:
               
chr18:53636063-53635369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
437, 450
               

               
Conread position:
               
151-378
               

               
Cow position:
               
chr18:44818620-44818847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
165, 144
               

               
Conread position:
               
151-478
               

               
Cow position:
               
chr18:56267478-56267152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
324, 0
               

               
Conread position:
               
151-841
               

               
Cow position:
               
chr18:47846703-47846013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 146
               

               
Conread position:
               
163-815
               

               
Cow position:
               
chr18:42724594-42723942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
172-630
               

               
Cow position:
               
chr18:44817828-44818289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
302, 307
               

               
Conread position:
               
178-837
               

               
Cow position:
               
chr18:53610542-53609883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
180-837
               

               
Cow position:
               
chr18:55497695-55497038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
407, 420
               

               
Conread position:
               
180-841
               

               
Cow position:
               
chr18:42724829-42724168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
196-500
               

               
Cow position:
               
chr18:56391959-56391655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
198, 184
               

               
Conread position:
               
196-714
               

               
Cow position:
               
chr18:54668836-54668316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 55
               

               
Conread position:
               
196-797
               

               
Cow position:
               
chr18:53587056-53586455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
196-842
               

               
Cow position:
               
chr18:56391572-56390927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 208
               

               
Conread position:
               
231-837
               

               
Cow position:
               
chr18:53636066-53635460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 173
               

               
Conread position:
               
247-837
               

               
Cow position:
               
chr18:56128115-56128705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 157
               

               
Conread position:
               
251-841
               

               
Cow position:
               
chr18:56316047-56316637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
45, 51
               

               
Conread position:
               
257-831
               

               
Cow position:
               
chr18:42724584-42724010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
337, 311
               

               
Conread position:
               
257-850
               

               
Cow position:
               
chr18:56330183-56329590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 302
               

               
Conread position:
               
262-850
               

               
Cow position:
               
chr18:56391590-56391002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 41
               

               
Conread position:
               
280-557
               

               
Cow position:
               
chr18:56391959-56391682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
184, 197
               

               
Conread position:
               
280-767
               

               
Cow position:
               
chr18:54668836-54668349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 188
               

               
Conread position:
               
318-608
               

               
Cow position:
               
chr18:44818619-44818908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
167, 140
               

               
Conread position:
               
326-844
               

               
Cow position:
               
chr18:55497714-55497199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
331-798
               

               
Cow position:
               
chr18:44817819-44818289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
235, 250
               

               
Conread position:
               
345-831
               

               
Cow position:
               
chr18:54668939-54668453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
138, 123
               

               
Conread position:
               
353-697
               

               
Cow position:
               
chr18:56391970-56391629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
234, 247
               

               
Conread position:
               
403-714
               

               
Cow position:
               
chr18:56267478-56267167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
199, 186
               

               
Conread position:
               
403-776
               

               
Cow position:
               
chr18:44817804-44818180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
415-850
               

               
Cow position:
               
chr18:47846691-47846256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 86
               

               
Conread position:
               
426-668
               

               
Cow position:
               
chr18:54664090-54664332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
161, 170
               

               
Conread position:
               
429-850
               

               
Cow position:
               
chr18:22844361-22843937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
139, 144
               

               
Conread position:
               
429-850
               

               
Cow position:
               
chr18:54668939-54668518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
432-850
               

               
Cow position:
               
chr18:54668768-54668350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
134, 165
               

               
Conread position:
               
437-757
               

               
Cow position:
               
chr18:56391970-56391650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
508-837
               

               
Cow position:
               
chr18:56267457-56267128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 81
               

               
Conread position:
               
512-788
               

               
Cow position:
               
chr18:54668940-54668664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
167, 159
               

               
Conread position:
               
520-788
               

               
Cow position:
               
chr18:44817840-44818108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 80
               

               
Conread position:
               
542-836
               

               
Cow position:
               
chr18:44944240-44944535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
546-850
               

               
Cow position:
               
chr18:56391642-56391338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 123
               

               
Conread position:
               
570-848
               

               
Cow position:
               
chr18:46317225-46316948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
164, 26
               

               
Conread position:
               
583-810
               

               
Cow position:
               
chr18:44817819-44818046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 65
               

               
Conread position:
               
613-844
               

               
Cow position:
               
chr18:56267436-56267205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
615-852
               

               
Cow position:
               
chr18:54664111-54664348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
131, 118
               

               
Conread position:
               
643-826
               

               
Cow position:
               
chr18:54669619-54669436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
82, 88
               
Show alignments to all cow chromosomes.