Cow genome map
| Conread name: | Ss1.1-Mixc-0037,b17.5 |
| Conread position: | 1-210 |
| Cow position: | chr25:3637009-3636800 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-243 |
| Cow position: | chr25:3676157-3676399 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 234, 228 |
| Conread position: | 1-294 |
| Cow position: | chr25:24384999-24384706 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 254, 249 |
| Conread position: | 1-294 |
| Cow position: | chr25:25653025-25653318 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 228 |
| Conread position: | 1-327 |
| Cow position: | chr25:33506829-33507155 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 308 |
| Conread position: | 1-333 |
| Cow position: | chr25:3636313-3635981 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 289, 300 |
| Conread position: | 1-347 |
| Cow position: | chr25:4657384-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 228 |
| Conread position: | 1-372 |
| Cow position: | chr25:25652941-25653312 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-422 |
| Cow position: | chr25:33530394-33530815 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr25:34473672-34474100 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 211, 189 |
| Conread position: | 1-462 |
| Cow position: | chr25:3636481-3636020 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 443, 447 |
| Conread position: | 1-616 |
| Cow position: | chr25:24398990-24398378 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 187 |
| Conread position: | 1-621 |
| Cow position: | chr25:33530142-33530762 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 189 |
| Conread position: | 5-714 |
| Cow position: | chr25:24385415-24384706 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 365 |
| Conread position: | 6-210 |
| Cow position: | chr25:33529268-33529472 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-844 |
| Cow position: | chr25:25652274-25653112 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 799, 794 |
| Conread position: | 7-386 |
| Cow position: | chr25:33506751-33507130 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-546 |
| Cow position: | chr25:3636559-3636020 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-262 |
| Cow position: | chr25:23267246-23266993 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 9-334 |
| Cow position: | chr25:3664272-3664597 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 220 |
| Conread position: | 9-408 |
| Cow position: | chr25:4657460-4657061 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 310, 301 |
| Conread position: | 9-418 |
| Cow position: | chr25:34763335-34763741 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 227, 119 |
| Conread position: | 9-420 |
| Cow position: | chr25:3675997-3676408 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 119 |
| Conread position: | 9-473 |
| Cow position: | chr25:3664104-3664568 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 9-760 |
| Cow position: | chr25:25652613-25653365 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 242 |
| Conread position: | 9-799 |
| Cow position: | chr25:25652529-25653319 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 455, 466 |
| Conread position: | 9-842 |
| Cow position: | chr25:25652193-25653027 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 208 |
| Conread position: | 9-844 |
| Cow position: | chr25:25652361-25653196 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 395 |
| Conread position: | 9-844 |
| Cow position: | chr25:25652445-25653280 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 410 |
| Conread position: | 10-521 |
| Cow position: | chr25:33157299-33156788 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 208 |
| Conread position: | 10-837 |
| Cow position: | chr25:34762835-34763656 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 579, 284 |
| Conread position: | 11-660 |
| Cow position: | chr25:34446945-34447594 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 376 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 452, 446 |
| Conread position: | 14-516 |
| Cow position: | chr25:34473601-34474100 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 208 |
| Conread position: | 14-673 |
| Cow position: | chr25:3663941-3664600 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 15-341 |
| Cow position: | chr25:3637082-3636753 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 289 |
| Conread position: | 16-715 |
| Cow position: | chr25:33530073-33530772 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 220 |
| Conread position: | 17-489 |
| Cow position: | chr25:33530326-33530798 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 380 |
| Conread position: | 18-254 |
| Cow position: | chr25:3636212-3635976 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-372 |
| Cow position: | chr25:33529112-33529466 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-211 |
| Cow position: | chr25:34733910-34733718 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 19-462 |
| Cow position: | chr25:33529029-33529472 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 382 |
| Conread position: | 19-767 |
| Cow position: | chr25:33157542-33156794 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 19-837 |
| Cow position: | chr25:24399212-24398409 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 167 |
| Conread position: | 24-418 |
| Cow position: | chr25:33299423-33299817 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 290, 294 |
| Conread position: | 26-473 |
| Cow position: | chr25:22235851-22236298 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 293, 284 |
| Conread position: | 26-557 |
| Cow position: | chr25:33127657-33128187 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 328 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 27-320 |
| Cow position: | chr25:33529205-33529498 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-322 |
| Cow position: | chr25:34733986-34733691 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 163 |
| Conread position: | 27-397 |
| Cow position: | chr25:3636371-3636001 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-817 |
| Cow position: | chr25:33298922-33299712 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 194 |
| Conread position: | 28-418 |
| Cow position: | chr25:36801567-36801957 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 286, 290 |
| Conread position: | 28-427 |
| Cow position: | chr25:34732584-34732185 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 113, 105 |
| Conread position: | 28-433 |
| Cow position: | chr25:33127826-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-510 |
| Cow position: | chr25:33127742-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-546 |
| Cow position: | chr25:33144873-33145388 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 316 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 324, 165 |
| Conread position: | 28-573 |
| Cow position: | chr25:33530253-33530798 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-632 |
| Cow position: | chr25:24385308-24384704 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-668 |
| Cow position: | chr25:22940492-22939842 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 263, 277 |
| Conread position: | 28-719 |
| Cow position: | chr25:326521-327218 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 417 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 340, 365 |
| Conread position: | 28-817 |
| Cow position: | chr25:33298671-33299460 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 412 |
| Conread position: | 28-837 |
| Cow position: | chr25:33298755-33299564 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 28-837 |
| Cow position: | chr25:34762937-34763740 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 28-837 |
| Cow position: | chr25:36800823-36801620 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 471 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 28-839 |
| Cow position: | chr25:34770100-34769289 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 559, 572 |
| Conread position: | 32-441 |
| Cow position: | chr25:34447049-34447459 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 32-557 |
| Cow position: | chr25:34447217-34447741 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 9, 488 |
| Conread position: | 41-809 |
| Cow position: | chr25:34770171-34769403 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 441 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 420, 416 |
| Conread position: | 47-852 |
| Cow position: | chr25:33530018-33530827 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 359 |
| Conread position: | 52-342 |
| Cow position: | chr25:36844488-36844207 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 207, 136 |
| Conread position: | 57-292 |
| Cow position: | chr25:22941240-22941005 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 57-430 |
| Cow position: | chr25:36844567-36844203 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 155, 164 |
| Conread position: | 65-837 |
| Cow position: | chr25:33157577-33156808 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 67-323 |
| Cow position: | chr25:427308-427564 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 138, 153 |
| Conread position: | 67-333 |
| Cow position: | chr25:23267272-23267006 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 130, 57 |
| Conread position: | 67-335 |
| Cow position: | chr25:34763474-34763742 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-390 |
| Cow position: | chr25:22941314-22940993 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 67-832 |
| Cow position: | chr25:33298626-33299391 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 519, 533 |
| Conread position: | 69-514 |
| Cow position: | chr25:36844639-36844203 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 358, 284 |
| Conread position: | 75-396 |
| Cow position: | chr25:34734023-34733701 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 76-673 |
| Cow position: | chr25:24398999-24398405 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 190 |
| Conread position: | 77-515 |
| Cow position: | chr25:4657476-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 120, 113 |
| Conread position: | 78-752 |
| Cow position: | chr25:22940526-22939842 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 146, 136 |
| Conread position: | 79-539 |
| Cow position: | chr25:33299310-33299770 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 79-708 |
| Cow position: | chr25:36800706-36801335 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 477, 469 |
| Conread position: | 79-837 |
| Cow position: | chr25:326488-327252 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 447 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 81-446 |
| Cow position: | chr25:34732615-34732252 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 306, 297 |
| Conread position: | 83-476 |
| Cow position: | chr25:36801538-36801931 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 231, 235 |
| Conread position: | 83-489 |
| Cow position: | chr25:3675987-3676393 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 134 |
| Conread position: | 83-557 |
| Cow position: | chr25:33144844-33145315 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 175, 168 |
| Conread position: | 83-760 |
| Cow position: | chr25:3663926-3664605 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 504, 517 |
| Conread position: | 85-553 |
| Cow position: | chr25:36801372-36801840 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 87-850 |
| Cow position: | chr25:25652187-25652950 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 500, 513 |
| Conread position: | 88-568 |
| Cow position: | chr25:22235829-22236309 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-837 |
| Cow position: | chr25:36801219-36801956 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 426 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 239, 118 |
| Conread position: | 90-660 |
| Cow position: | chr25:34473509-34474076 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 349 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 304, 292 |
| Conread position: | 90-837 |
| Cow position: | chr25:33298565-33299312 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 136 |
| Conread position: | 92-265 |
| Cow position: | chr25:24397909-24397736 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 165, 159 |
| Conread position: | 93-456 |
| Cow position: | chr25:22941372-22941009 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 93-681 |
| Cow position: | chr25:3636557-3635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 97 |
| Conread position: | 103-467 |
| Cow position: | chr25:33506763-33507127 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-550 |
| Cow position: | chr25:33529029-33529476 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 345 |
| Conread position: | 103-798 |
| Cow position: | chr25:24385401-24384706 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 301 |
| Conread position: | 115-601 |
| Cow position: | chr25:23266995-23266510 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 148, 137 |
| Conread position: | 140-836 |
| Cow position: | chr25:34446990-34447686 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 407 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 155, 161 |
| Conread position: | 151-376 |
| Cow position: | chr25:3637027-3636802 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-512 |
| Cow position: | chr25:34734023-34733669 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 54 |
| Conread position: | 161-836 |
| Cow position: | chr25:22940527-22939842 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 147, 136 |
| Conread position: | 163-841 |
| Cow position: | chr25:326488-327172 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 404 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 372, 490 |
| Conread position: | 165-461 |
| Cow position: | chr25:34732615-34732319 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 133, 144 |
| Conread position: | 167-555 |
| Cow position: | chr25:3675987-3676375 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 50 |
| Conread position: | 167-845 |
| Cow position: | chr25:3663926-3664604 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 174-826 |
| Cow position: | chr25:24385416-24384762 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 216 |
| Conread position: | 175-557 |
| Cow position: | chr25:22941374-22940994 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 175-765 |
| Cow position: | chr25:3636559-3635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 298 |
| Conread position: | 177-584 |
| Cow position: | chr25:4657460-4657053 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 134 |
| Conread position: | 196-551 |
| Cow position: | chr25:33506772-33507127 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 196-630 |
| Cow position: | chr25:33529038-33529472 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 273 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 385, 379 |
| Conread position: | 223-837 |
| Cow position: | chr25:34446989-34447603 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 353 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 420, 424 |
| Conread position: | 227-839 |
| Cow position: | chr25:3636592-3635979 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 234-844 |
| Cow position: | chr25:3637028-3636394 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 393 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 256, 229 |
| Conread position: | 251-630 |
| Cow position: | chr25:36844625-36844255 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 228, 224 |
| Conread position: | 253-762 |
| Cow position: | chr25:23267499-23266997 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 341, 180 |
| Conread position: | 257-704 |
| Cow position: | chr25:3675993-3676438 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 289 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 129, 125 |
| Conread position: | 257-850 |
| Cow position: | chr25:3663932-3664525 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 258-683 |
| Cow position: | chr25:4657463-4657038 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 137 |
| Conread position: | 258-836 |
| Cow position: | chr25:34473509-34474084 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 161 |
| Conread position: | 261-628 |
| Cow position: | chr25:22941372-22941005 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 38 |
| Conread position: | 263-841 |
| Cow position: | chr25:23267570-23267002 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 349 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 268-837 |
| Cow position: | chr25:33157545-33156976 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 270-850 |
| Cow position: | chr25:24385402-24384822 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 344 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 197, 202 |
| Conread position: | 271-624 |
| Cow position: | chr25:33506763-33507116 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 316, 329 |
| Conread position: | 272-718 |
| Cow position: | chr25:33506686-33507126 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 23 |
| Conread position: | 278-548 |
| Cow position: | chr25:34733987-34733717 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 108, 126 |
| Conread position: | 280-718 |
| Cow position: | chr25:33529038-33529476 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 327-658 |
| Cow position: | chr25:34734023-34733691 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 149 |
| Conread position: | 329-837 |
| Cow position: | chr25:33127709-33128215 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 188, 15 |
| Conread position: | 339-728 |
| Cow position: | chr25:3675991-3676381 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 263 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 134, 125 |
| Conread position: | 340-764 |
| Cow position: | chr25:33127802-33128226 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 343-850 |
| Cow position: | chr25:3636559-3636052 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 133 |
| Conread position: | 345-768 |
| Cow position: | chr25:4657460-4657037 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 137, 132 |
| Conread position: | 364-817 |
| Cow position: | chr25:22235853-22236306 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 374-837 |
| Cow position: | chr25:33127668-33128131 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 403-831 |
| Cow position: | chr25:33529077-33529505 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 72 |
| Conread position: | 405-798 |
| Cow position: | chr25:22940535-22940142 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 414-848 |
| Cow position: | chr25:33506738-33507175 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 173, 186 |
| Conread position: | 417-762 |
| Cow position: | chr25:34734016-34733671 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 425-839 |
| Cow position: | chr25:3675993-3676407 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 175 |
| Conread position: | 439-844 |
| Cow position: | chr25:34762844-34763246 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 148, 161 |
| Conread position: | 448-836 |
| Cow position: | chr25:4657441-4657053 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 483-850 |
| Cow position: | chr25:33506724-33507090 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 92, 19 |
| Conread position: | 486-796 |
| Cow position: | chr25:22941315-22941005 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 82, 67 |
| Conread position: | 487-850 |
| Cow position: | chr25:24385353-24384990 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 100, 113 |
| Conread position: | 495-844 |
| Cow position: | chr25:3663918-3664267 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 105 |
| Conread position: | 503-797 |
| Cow position: | chr25:34732613-34732318 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 84, 97 |
| Conread position: | 506-826 |
| Cow position: | chr25:34734011-34733691 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 81, 94 |
| Conread position: | 507-850 |
| Cow position: | chr25:3675991-3676334 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 80, 93 |
| Conread position: | 508-804 |
| Cow position: | chr25:33144933-33145226 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 510-844 |
| Cow position: | chr25:4657463-4657129 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 77, 90 |
| Conread position: | 511-850 |
| Cow position: | chr25:33529101-33529440 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 89 |
| Conread position: | 522-850 |
| Cow position: | chr25:33529028-33529356 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 110, 125 |
| Conread position: | 595-844 |
| Cow position: | chr25:24385415-24385164 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 602-827 |
| Cow position: | chr25:34733999-34733774 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 602-850 |
| Cow position: | chr25:4657455-4657207 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 607-844 |
| Cow position: | chr25:34473522-34473759 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 108 |
| Conread position: | 613-841 |
| Cow position: | chr25:33127823-33128051 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 613-850 |
| Cow position: | chr25:427350-427590 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 175, 190 |
Show alignments to all cow chromosomes.