Cow genome map
| Conread name: | Ss1.1-Mixc-0037,b17.5 |
| Conread position: | 1-201 |
| Cow position: | chr4:65261387-65261187 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 1-334 |
| Cow position: | chr4:65494770-65494437 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 127, 140 |
| Conread position: | 1-347 |
| Cow position: | chr4:65703502-65703157 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 134, 140 |
| Conread position: | 1-372 |
| Cow position: | chr4:65121698-65122069 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 1-462 |
| Cow position: | chr4:65494944-65494477 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 314 |
| Conread position: | 1-672 |
| Cow position: | chr4:65350126-65350794 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 399 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 201, 220 |
| Conread position: | 6-333 |
| Cow position: | chr4:65157840-65158176 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 68, 143 |
| Conread position: | 6-369 |
| Cow position: | chr4:65261550-65261187 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 9-703 |
| Cow position: | chr4:65703662-65702968 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 431 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 14-545 |
| Cow position: | chr4:65121543-65122074 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 299, 305 |
| Conread position: | 15-422 |
| Cow position: | chr4:65494840-65494433 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 210 |
| Conread position: | 18-549 |
| Cow position: | chr4:65703569-65703041 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 207 |
| Conread position: | 18-717 |
| Cow position: | chr4:65261868-65261175 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 45 |
| Conread position: | 27-674 |
| Cow position: | chr4:65146443-65147093 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 399 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 185, 195 |
| Conread position: | 29-759 |
| Cow position: | chr4:65146363-65147093 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 449 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 37-549 |
| Cow position: | chr4:65494992-65494474 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 105 |
| Conread position: | 51-301 |
| Cow position: | chr4:65261421-65261171 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 162, 174 |
| Conread position: | 58-714 |
| Cow position: | chr4:65350099-65350752 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 163 |
| Conread position: | 88-785 |
| Cow position: | chr4:65703667-65702970 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 91-678 |
| Cow position: | chr4:65495022-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 135 |
| Conread position: | 103-798 |
| Cow position: | chr4:65350060-65350752 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 427 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 103, 123 |
| Conread position: | 111-321 |
| Cow position: | chr4:65121163-65121373 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 119, 125 |
| Conread position: | 111-778 |
| Cow position: | chr4:65261859-65261198 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 26 |
| Conread position: | 126-844 |
| Cow position: | chr4:65349831-65350546 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 427 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 151-629 |
| Cow position: | chr4:65121596-65122074 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 162, 168 |
| Conread position: | 157-850 |
| Cow position: | chr4:65261896-65261210 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 433 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 241, 15 |
| Conread position: | 167-507 |
| Cow position: | chr4:65157833-65158182 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 169-550 |
| Cow position: | chr4:65702881-65702500 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 259, 251 |
| Conread position: | 169-841 |
| Cow position: | chr4:65146417-65147092 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 406 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 169-848 |
| Cow position: | chr4:65350042-65350718 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 403 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 310, 306 |
| Conread position: | 178-762 |
| Cow position: | chr4:65495019-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 391 |
| Conread position: | 259-844 |
| Cow position: | chr4:65495022-65494431 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 137 |
| Conread position: | 266-797 |
| Cow position: | chr4:65121543-65122074 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 44 |
| Conread position: | 310-767 |
| Cow position: | chr4:65702907-65702453 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 329-850 |
| Cow position: | chr4:65703679-65703158 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 65 |
| Conread position: | 346-850 |
| Cow position: | chr4:65495019-65494509 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 260 |
| Conread position: | 350-852 |
| Cow position: | chr4:65121543-65122044 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 307 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 133, 125 |
| Conread position: | 420-836 |
| Cow position: | chr4:65702882-65702466 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 49 |
| Conread position: | 494-848 |
| Cow position: | chr4:65495039-65494675 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 93, 106 |
| Conread position: | 508-852 |
| Cow position: | chr4:65157838-65158192 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 301 |
| Conread position: | 514-754 |
| Cow position: | chr4:65121146-65121386 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 588-759 |
| Cow position: | chr4:65402039-65402209 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 128, 11 |
| Conread position: | 607-850 |
| Cow position: | chr4:65146435-65146676 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 199, 206 |
Show alignments to all cow chromosomes.