Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 447-711 |
| Cow position: | chr21:37355576-37355847 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 448-652 |
| Cow position: | chr21:29942898-29943114 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 141 |
| Conread position: | 448-657 |
| Cow position: | chr21:5597042-5597264 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 448-686 |
| Cow position: | chr21:37322408-37322168 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 448-704 |
| Cow position: | chr21:26614775-26614502 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-709 |
| Cow position: | chr21:6619092-6618831 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 448-709 |
| Cow position: | chr21:44804364-44804099 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 448-726 |
| Cow position: | chr21:16166738-16166458 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 448-731 |
| Cow position: | chr21:45447497-45447777 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 448-732 |
| Cow position: | chr21:34141293-34140984 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 144 |
| Conread position: | 448-732 |
| Cow position: | chr21:37886306-37886592 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 449-685 |
| Cow position: | chr21:38482814-38483046 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 449-705 |
| Cow position: | chr21:23499930-23499668 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 449-726 |
| Cow position: | chr21:37941790-37941502 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 165 |
| Conread position: | 449-732 |
| Cow position: | chr21:30897311-30897599 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 25, 208 |
| Conread position: | 451-712 |
| Cow position: | chr21:27344506-27344240 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 131 |
| Conread position: | 451-712 |
| Cow position: | chr21:39075814-39075542 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 23, 167 |
| Conread position: | 452-706 |
| Cow position: | chr21:23785925-23786192 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 22, 247 |
| Conread position: | 453-627 |
| Cow position: | chr21:17672742-17672564 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 70 |
| Conread position: | 454-593 |
| Cow position: | chr21:20910195-20910047 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 144 |
| Conread position: | 454-732 |
| Cow position: | chr21:37282207-37282489 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 131 |
| Conread position: | 458-732 |
| Cow position: | chr21:39765751-39766016 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 475-711 |
| Cow position: | chr21:24944977-24944729 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 476-726 |
| Cow position: | chr21:33292633-33292898 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 477-703 |
| Cow position: | chr21:16981800-16982033 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 477-710 |
| Cow position: | chr21:1991224-1991451 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 480-693 |
| Cow position: | chr21:26177231-26177442 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 518-726 |
| Cow position: | chr21:15543973-15543771 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 559-696 |
| Cow position: | chr21:8273550-8273413 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 567-722 |
| Cow position: | chr21:25018889-25019044 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 145, 43 |
| Conread position: | 571-732 |
| Cow position: | chr21:23398983-23399143 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 141, 19 |
| Conread position: | 584-711 |
| Cow position: | chr21:33974534-33974659 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 586-732 |
| Cow position: | chr21:24972564-24972418 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 126, 83 |
| Conread position: | 589-714 |
| Cow position: | chr21:41041457-41041582 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 604-711 |
| Cow position: | chr21:17672273-17672167 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.