Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 435-696 |
| Cow position: | chr9:27310547-27310813 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 25, 6 |
| Conread position: | 436-705 |
| Cow position: | chr9:42037867-42037586 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 262 |
| Conread position: | 447-663 |
| Cow position: | chr9:32396145-32395917 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 140 |
| Conread position: | 447-705 |
| Cow position: | chr9:54924824-54924553 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 245 |
| Conread position: | 448-663 |
| Cow position: | chr9:38692341-38692560 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 448-663 |
| Cow position: | chr9:44517760-44517552 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 448-676 |
| Cow position: | chr9:43912126-43911889 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-694 |
| Cow position: | chr9:49271152-49271397 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 448-699 |
| Cow position: | chr9:24850440-24850187 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 448-701 |
| Cow position: | chr9:52725019-52725280 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 448-711 |
| Cow position: | chr9:11849710-11849446 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 448-711 |
| Cow position: | chr9:62131979-62132257 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 143 |
| Conread position: | 448-722 |
| Cow position: | chr9:12183949-12183661 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 448-723 |
| Cow position: | chr9:2633977-2634262 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 448-723 |
| Cow position: | chr9:2637176-2637461 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 448-726 |
| Cow position: | chr9:11830206-11829917 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 170 |
| Conread position: | 448-732 |
| Cow position: | chr9:5621833-5622114 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 185 |
| Conread position: | 448-732 |
| Cow position: | chr9:25502341-25502627 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 448-732 |
| Cow position: | chr9:34762653-34762947 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 449-664 |
| Cow position: | chr9:8779038-8779267 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 449-685 |
| Cow position: | chr9:10355359-10355582 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 56 |
| Conread position: | 449-688 |
| Cow position: | chr9:41317767-41318023 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 449-711 |
| Cow position: | chr9:44408240-44407966 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 157 |
| Conread position: | 450-711 |
| Cow position: | chr9:5486051-5485797 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 450-730 |
| Cow position: | chr9:13845931-13845646 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 450-732 |
| Cow position: | chr9:10761156-10761440 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 24, 180 |
| Conread position: | 451-684 |
| Cow position: | chr9:16745874-16745626 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 462-709 |
| Cow position: | chr9:2223588-2223844 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 464-730 |
| Cow position: | chr9:55651212-55650943 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 10, 120 |
| Conread position: | 476-732 |
| Cow position: | chr9:55365052-55364802 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 114, 30 |
| Conread position: | 483-711 |
| Cow position: | chr9:46657305-46657541 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 24, 123 |
| Conread position: | 490-727 |
| Cow position: | chr9:8406072-8406311 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 10, 87 |
| Conread position: | 497-729 |
| Cow position: | chr9:5518629-5518864 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 39, 131 |
| Conread position: | 506-709 |
| Cow position: | chr9:417250-417051 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 527-722 |
| Cow position: | chr9:18570283-18570471 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 531-711 |
| Cow position: | chr9:26191011-26191186 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 538-732 |
| Cow position: | chr9:51269971-51269773 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 568-732 |
| Cow position: | chr9:44944037-44944200 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 144, 42 |
| Conread position: | 571-709 |
| Cow position: | chr9:24953601-24953738 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 574-731 |
| Cow position: | chr9:14732401-14732240 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 576-732 |
| Cow position: | chr9:22976797-22976953 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 136, 19 |
| Conread position: | 586-732 |
| Cow position: | chr9:12182021-12181877 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 604-711 |
| Cow position: | chr9:4835023-4834916 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.