Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 441-711 |
| Cow position: | chr1:22516370-22516653 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 443-690 |
| Cow position: | chr1:17291813-17291551 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 444-731 |
| Cow position: | chr1:22495367-22495675 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 231 |
| Conread position: | 447-698 |
| Cow position: | chr1:20581786-20582038 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 448-658 |
| Cow position: | chr1:14561109-14560887 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 213 |
| Conread position: | 448-679 |
| Cow position: | chr1:28284413-28284652 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 448-679 |
| Cow position: | chr1:62732414-62732649 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 448-688 |
| Cow position: | chr1:25886236-25885989 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 448-691 |
| Cow position: | chr1:72803395-72803154 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 448-699 |
| Cow position: | chr1:86020227-86019990 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 448-706 |
| Cow position: | chr1:55429121-55428854 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 128 |
| Conread position: | 448-711 |
| Cow position: | chr1:15307873-15308141 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 206 |
| Conread position: | 448-711 |
| Cow position: | chr1:30041561-30041845 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 183 |
| Conread position: | 448-711 |
| Cow position: | chr1:74947288-74947010 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 253 |
| Conread position: | 448-711 |
| Cow position: | chr1:82865068-82865340 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 29, 133 |
| Conread position: | 448-711 |
| Cow position: | chr1:98790472-98790743 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 223 |
| Conread position: | 448-726 |
| Cow position: | chr1:23624003-23624284 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 448-726 |
| Cow position: | chr1:64480142-64479850 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 448-726 |
| Cow position: | chr1:82406715-82406425 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 448-730 |
| Cow position: | chr1:52206521-52206804 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 448-731 |
| Cow position: | chr1:54162972-54162674 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 252 |
| Conread position: | 448-731 |
| Cow position: | chr1:86325772-86325475 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 448-732 |
| Cow position: | chr1:77868010-77868277 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 264, 22 |
| Conread position: | 449-644 |
| Cow position: | chr1:60120268-60120463 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 25, 109 |
| Conread position: | 449-648 |
| Cow position: | chr1:8869824-8869614 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 449-661 |
| Cow position: | chr1:31378094-31377881 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 449-691 |
| Cow position: | chr1:70933547-70933309 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 449-711 |
| Cow position: | chr1:42174753-42174480 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 449-727 |
| Cow position: | chr1:64099428-64099151 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 449-732 |
| Cow position: | chr1:18224039-18223740 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 257 |
| Conread position: | 449-732 |
| Cow position: | chr1:45573023-45572741 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 449-732 |
| Cow position: | chr1:52774685-52774399 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 449-732 |
| Cow position: | chr1:81371838-81371563 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 449-732 |
| Cow position: | chr1:92551298-92551015 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 450-730 |
| Cow position: | chr1:86614702-86614986 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 27, 172 |
| Conread position: | 450-732 |
| Cow position: | chr1:1825619-1825909 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 269 |
| Conread position: | 454-684 |
| Cow position: | chr1:58882170-58881942 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 454-732 |
| Cow position: | chr1:52819157-52819426 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 457-680 |
| Cow position: | chr1:59808101-59807873 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 20, 128 |
| Conread position: | 457-702 |
| Cow position: | chr1:71938668-71938409 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 457-705 |
| Cow position: | chr1:37739755-37739505 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 216 |
| Conread position: | 458-711 |
| Cow position: | chr1:57646522-57646777 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 458-730 |
| Cow position: | chr1:55202774-55202500 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 16, 182 |
| Conread position: | 459-730 |
| Cow position: | chr1:34892412-34892688 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 98 |
| Conread position: | 460-684 |
| Cow position: | chr1:29975753-29975518 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 158 |
| Conread position: | 460-709 |
| Cow position: | chr1:59910198-59910460 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 14, 165 |
| Conread position: | 460-711 |
| Cow position: | chr1:33085146-33084889 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 26 |
| Conread position: | 462-707 |
| Cow position: | chr1:7233154-7233406 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 12, 49 |
| Conread position: | 489-729 |
| Cow position: | chr1:74713344-74713586 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 496-711 |
| Cow position: | chr1:86364784-86364998 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 496-732 |
| Cow position: | chr1:77169247-77169477 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 199, 18 |
| Conread position: | 500-703 |
| Cow position: | chr1:34310746-34310955 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 8, 149 |
| Conread position: | 501-709 |
| Cow position: | chr1:9512211-9511996 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 155 |
| Conread position: | 502-675 |
| Cow position: | chr1:10169146-10168970 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 503-718 |
| Cow position: | chr1:87915059-87914843 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 506-731 |
| Cow position: | chr1:85409963-85409740 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 84, 43 |
| Conread position: | 510-711 |
| Cow position: | chr1:88960375-88960579 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 8 |
| Conread position: | 517-711 |
| Cow position: | chr1:84152414-84152607 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 570-732 |
| Cow position: | chr1:40223071-40222905 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 577-722 |
| Cow position: | chr1:40161188-40161338 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 577-722 |
| Cow position: | chr1:40164214-40164364 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 581-710 |
| Cow position: | chr1:39244598-39244471 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 592-712 |
| Cow position: | chr1:26831743-26831863 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.