Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 437-732 |
| Cow position: | chr11:52655969-52655663 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 63, 174 |
| Conread position: | 442-718 |
| Cow position: | chr11:10877043-10877340 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 151 |
| Conread position: | 444-730 |
| Cow position: | chr11:33103836-33103550 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 33, 129 |
| Conread position: | 446-621 |
| Cow position: | chr11:36496655-36496839 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 155 |
| Conread position: | 448-659 |
| Cow position: | chr11:58614472-58614693 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-665 |
| Cow position: | chr11:25807945-25807722 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 118 |
| Conread position: | 448-675 |
| Cow position: | chr11:34023678-34023922 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-682 |
| Cow position: | chr11:14949591-14949353 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 152 |
| Conread position: | 448-685 |
| Cow position: | chr11:80002843-80003082 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 448-685 |
| Cow position: | chr11:81337159-81336923 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 448-691 |
| Cow position: | chr11:51177316-51177555 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 448-704 |
| Cow position: | chr11:62019785-62019510 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 233 |
| Conread position: | 448-708 |
| Cow position: | chr11:29014207-29014464 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 448-709 |
| Cow position: | chr11:35252179-35251913 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 11, 126 |
| Conread position: | 448-718 |
| Cow position: | chr11:77763921-77763645 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 448-726 |
| Cow position: | chr11:58313053-58313341 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 448-730 |
| Cow position: | chr11:5221604-5221328 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 23 |
| Conread position: | 448-732 |
| Cow position: | chr11:12896813-12897096 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 448-732 |
| Cow position: | chr11:24007902-24008185 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 448-732 |
| Cow position: | chr11:59473197-59473501 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 29, 140 |
| Conread position: | 449-618 |
| Cow position: | chr11:25855972-25856146 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 449-675 |
| Cow position: | chr11:23258820-23258590 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 449-710 |
| Cow position: | chr11:29004250-29004517 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 450-714 |
| Cow position: | chr11:49074478-49074221 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 451-678 |
| Cow position: | chr11:8828814-8828580 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 183 |
| Conread position: | 452-732 |
| Cow position: | chr11:39831399-39831119 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 454-726 |
| Cow position: | chr11:77756928-77756663 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 457-704 |
| Cow position: | chr11:65159630-65159374 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 457-727 |
| Cow position: | chr11:77772864-77772588 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 459-731 |
| Cow position: | chr11:57061699-57061978 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 15, 93 |
| Conread position: | 463-732 |
| Cow position: | chr11:85537390-85537658 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 478-732 |
| Cow position: | chr11:43831951-43831689 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 103 |
| Conread position: | 494-642 |
| Cow position: | chr11:57753450-57753302 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 496-725 |
| Cow position: | chr11:21121122-21121348 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 500-672 |
| Cow position: | chr11:82528763-82528935 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 503-711 |
| Cow position: | chr11:69491279-69491501 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 505-732 |
| Cow position: | chr11:26787294-26787519 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 559-712 |
| Cow position: | chr11:25972981-25972829 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 580-732 |
| Cow position: | chr11:9423864-9424016 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 585-730 |
| Cow position: | chr11:52859414-52859561 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 596-726 |
| Cow position: | chr11:23738818-23738688 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 605-711 |
| Cow position: | chr11:18154275-18154171 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.