Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 443-646 |
| Cow position: | chr13:1839544-1839349 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 444-712 |
| Cow position: | chr13:1636166-1635888 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 209 |
| Conread position: | 447-683 |
| Cow position: | chr13:10859804-10860045 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 30, 102 |
| Conread position: | 448-684 |
| Cow position: | chr13:29631011-29630766 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 191 |
| Conread position: | 448-684 |
| Cow position: | chr13:49848078-49847832 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 164 |
| Conread position: | 448-685 |
| Cow position: | chr13:47863547-47863794 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 448-700 |
| Cow position: | chr13:8245179-8245439 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 154 |
| Conread position: | 448-706 |
| Cow position: | chr13:6621443-6621703 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 448-706 |
| Cow position: | chr13:34995173-34995441 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 448-708 |
| Cow position: | chr13:11570841-11570589 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 123 |
| Conread position: | 448-710 |
| Cow position: | chr13:43384481-43384744 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 448-725 |
| Cow position: | chr13:39487189-39487457 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 448-726 |
| Cow position: | chr13:12324947-12325237 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 448-730 |
| Cow position: | chr13:22277013-22277319 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-731 |
| Cow position: | chr13:55406502-55406797 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 449-640 |
| Cow position: | chr13:57745943-57746151 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 449-678 |
| Cow position: | chr13:12233301-12233538 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 114 |
| Conread position: | 449-682 |
| Cow position: | chr13:6603060-6603295 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 449-699 |
| Cow position: | chr13:11767886-11768149 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 152 |
| Conread position: | 449-711 |
| Cow position: | chr13:1368170-1367900 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 449-711 |
| Cow position: | chr13:46458778-46458506 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 197 |
| Conread position: | 449-726 |
| Cow position: | chr13:46636975-46637253 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 449-731 |
| Cow position: | chr13:48626905-48626634 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 451-690 |
| Cow position: | chr13:34333790-34334037 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 451-711 |
| Cow position: | chr13:47590992-47591249 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 457-643 |
| Cow position: | chr13:24404718-24404535 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 458-684 |
| Cow position: | chr13:20180564-20180323 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 458-726 |
| Cow position: | chr13:34931147-34931417 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 16, 129 |
| Conread position: | 460-642 |
| Cow position: | chr13:42071158-42070969 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 40, 179 |
| Conread position: | 460-685 |
| Cow position: | chr13:56842746-56842981 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 464-732 |
| Cow position: | chr13:45497122-45497390 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 481-705 |
| Cow position: | chr13:25698873-25699095 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 483-690 |
| Cow position: | chr13:46465087-46464870 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 521-732 |
| Cow position: | chr13:25956591-25956383 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 547-731 |
| Cow position: | chr13:37497679-37497866 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 559-732 |
| Cow position: | chr13:46349467-46349640 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 572-694 |
| Cow position: | chr13:47280625-47280503 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-711 |
| Cow position: | chr13:38535409-38535270 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 586-727 |
| Cow position: | chr13:38362291-38362148 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 126, 0 |
Show alignments to all cow chromosomes.