Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 435-726 |
| Cow position: | chr2:72598615-72598926 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 444-709 |
| Cow position: | chr2:53717157-53716881 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 447-711 |
| Cow position: | chr2:35304597-35304869 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 64 |
| Conread position: | 447-732 |
| Cow position: | chr2:27318698-27318980 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 448-638 |
| Cow position: | chr2:6820459-6820268 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 448-674 |
| Cow position: | chr2:13604298-13604535 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 448-684 |
| Cow position: | chr2:62563859-62563612 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-685 |
| Cow position: | chr2:50379434-50379678 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 116 |
| Conread position: | 448-686 |
| Cow position: | chr2:717661-717434 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 448-690 |
| Cow position: | chr2:14465728-14465476 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 149 |
| Conread position: | 448-711 |
| Cow position: | chr2:30389221-30389478 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 448-711 |
| Cow position: | chr2:71495220-71495500 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 26, 134 |
| Conread position: | 448-726 |
| Cow position: | chr2:33791652-33791360 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 448-727 |
| Cow position: | chr2:31910189-31909906 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 448-731 |
| Cow position: | chr2:18250063-18249758 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 225 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 26, 206 |
| Conread position: | 448-731 |
| Cow position: | chr2:42897295-42897007 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 448-732 |
| Cow position: | chr2:19749437-19749731 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 172 |
| Conread position: | 448-732 |
| Cow position: | chr2:20301807-20302074 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 448-732 |
| Cow position: | chr2:62674405-62674113 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 99 |
| Conread position: | 449-679 |
| Cow position: | chr2:3295480-3295726 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 449-698 |
| Cow position: | chr2:27145534-27145278 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 210 |
| Conread position: | 449-706 |
| Cow position: | chr2:24720127-24720385 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 193 |
| Conread position: | 449-726 |
| Cow position: | chr2:47744814-47745105 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 152 |
| Conread position: | 449-731 |
| Cow position: | chr2:32393243-32393534 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 25, 163 |
| Conread position: | 449-732 |
| Cow position: | chr2:24883787-24884081 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 275 |
| Conread position: | 449-732 |
| Cow position: | chr2:46141316-46141040 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 451-709 |
| Cow position: | chr2:31419840-31420107 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 21, 214 |
| Conread position: | 452-711 |
| Cow position: | chr2:85055843-85056098 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 454-712 |
| Cow position: | chr2:54890157-54890422 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 243 |
| Conread position: | 457-654 |
| Cow position: | chr2:35359639-35359840 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 139 |
| Conread position: | 457-731 |
| Cow position: | chr2:2281-2004 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 130 |
| Conread position: | 458-711 |
| Cow position: | chr2:65749504-65749758 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 458-731 |
| Cow position: | chr2:71120872-71121150 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 458-732 |
| Cow position: | chr2:6292479-6292756 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 459-696 |
| Cow position: | chr2:75914466-75914692 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 459-711 |
| Cow position: | chr2:10295940-10296199 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 119 |
| Conread position: | 473-727 |
| Cow position: | chr2:63288300-63288031 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 204 |
| Conread position: | 473-727 |
| Cow position: | chr2:74388259-74388005 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 481-732 |
| Cow position: | chr2:43345419-43345166 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 507-711 |
| Cow position: | chr2:15105525-15105715 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 189, 30 |
| Conread position: | 508-732 |
| Cow position: | chr2:77968601-77968376 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 524-732 |
| Cow position: | chr2:21697816-21697607 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 547-732 |
| Cow position: | chr2:51827719-51827534 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 36, 143 |
| Conread position: | 568-732 |
| Cow position: | chr2:69982377-69982538 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 574-732 |
| Cow position: | chr2:64073514-64073671 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 130 |
| Conread position: | 583-726 |
| Cow position: | chr2:41490622-41490765 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 129, 92 |
| Conread position: | 587-709 |
| Cow position: | chr2:3182651-3182529 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 605-732 |
| Cow position: | chr2:66435282-66435410 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 107, 21 |
| Conread position: | 613-732 |
| Cow position: | chr2:76055551-76055432 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 63 |
Show alignments to all cow chromosomes.