Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 410-678 |
| Cow position: | chr24:16476172-16476451 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 441-711 |
| Cow position: | chr24:37386552-37386271 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 250 |
| Conread position: | 444-661 |
| Cow position: | chr24:14913740-14913517 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 448-641 |
| Cow position: | chr24:38643443-38643639 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 448-666 |
| Cow position: | chr24:38001933-38001705 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 448-675 |
| Cow position: | chr24:34369200-34368964 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 153 |
| Conread position: | 448-709 |
| Cow position: | chr24:25245855-25246113 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 448-709 |
| Cow position: | chr24:32669085-32669330 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 448-711 |
| Cow position: | chr24:12572330-12572607 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 26, 210 |
| Conread position: | 448-711 |
| Cow position: | chr24:30695893-30695624 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 80, 125 |
| Conread position: | 448-732 |
| Cow position: | chr24:26846473-26846158 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 175 |
| Conread position: | 449-716 |
| Cow position: | chr24:30900422-30900143 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 228 |
| Conread position: | 449-726 |
| Cow position: | chr24:35836431-35836152 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 451-662 |
| Cow position: | chr24:28028897-28028679 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 23, 155 |
| Conread position: | 455-731 |
| Cow position: | chr24:15473771-15474044 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 19, 136 |
| Conread position: | 457-707 |
| Cow position: | chr24:25229245-25228990 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 17, 141 |
| Conread position: | 457-711 |
| Cow position: | chr24:37480501-37480247 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 459-732 |
| Cow position: | chr24:17763447-17763162 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 15, 194 |
| Conread position: | 473-708 |
| Cow position: | chr24:17416974-17417206 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 110 |
| Conread position: | 476-699 |
| Cow position: | chr24:40041008-40040778 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 489-731 |
| Cow position: | chr24:6177247-6177496 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 497-685 |
| Cow position: | chr24:8021414-8021602 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 146 |
| Conread position: | 500-711 |
| Cow position: | chr24:41405457-41405238 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 500-731 |
| Cow position: | chr24:7038637-7038862 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 137, 10 |
| Conread position: | 531-732 |
| Cow position: | chr24:42817159-42817361 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 544-711 |
| Cow position: | chr24:19644582-19644749 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 561-712 |
| Cow position: | chr24:6665516-6665363 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 562-729 |
| Cow position: | chr24:36853255-36853421 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 150, 23 |
| Conread position: | 580-732 |
| Cow position: | chr24:43351150-43350996 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 598-711 |
| Cow position: | chr24:43492538-43492428 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
Show alignments to all cow chromosomes.