Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 448-648 |
| Cow position: | chr29:18963570-18963772 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 448-691 |
| Cow position: | chr29:38246915-38246661 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 448-702 |
| Cow position: | chr29:43963690-43963441 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 448-712 |
| Cow position: | chr29:477933-478209 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-712 |
| Cow position: | chr29:16359442-16359722 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-723 |
| Cow position: | chr29:14034496-14034217 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 448-729 |
| Cow position: | chr29:18338715-18338423 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 29, 150 |
| Conread position: | 448-731 |
| Cow position: | chr29:3389981-3389711 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 448-732 |
| Cow position: | chr29:8906351-8906654 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 26, 155 |
| Conread position: | 448-732 |
| Cow position: | chr29:22454966-22454703 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 448-732 |
| Cow position: | chr29:42268522-42268820 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 449-732 |
| Cow position: | chr29:17339469-17339182 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 38, 103 |
| Conread position: | 450-640 |
| Cow position: | chr29:10225201-10225013 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 450-711 |
| Cow position: | chr29:134026-134275 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 450-732 |
| Cow position: | chr29:18880569-18880295 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 451-711 |
| Cow position: | chr29:17965797-17966064 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 457-706 |
| Cow position: | chr29:31488701-31488958 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 165 |
| Conread position: | 457-711 |
| Cow position: | chr29:2589056-2588793 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 47, 243 |
| Conread position: | 460-705 |
| Cow position: | chr29:2885614-2885360 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 460-709 |
| Cow position: | chr29:19931178-19931428 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 462-710 |
| Cow position: | chr29:2481495-2481240 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 14, 122 |
| Conread position: | 462-710 |
| Cow position: | chr29:30812591-30812848 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 241 |
| Conread position: | 462-726 |
| Cow position: | chr29:9512714-9512991 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 486-732 |
| Cow position: | chr29:35036598-35036851 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 213 |
| Conread position: | 496-729 |
| Cow position: | chr29:14032355-14032124 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 501-675 |
| Cow position: | chr29:13040652-13040467 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 512-679 |
| Cow position: | chr29:13653131-13653304 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 570-732 |
| Cow position: | chr29:37207722-37207885 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 590-712 |
| Cow position: | chr29:21198669-21198549 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
Show alignments to all cow chromosomes.