Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 410-709 |
| Cow position: | chr4:49741331-49741632 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 447-691 |
| Cow position: | chr4:15784989-15784734 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 27, 208 |
| Conread position: | 448-664 |
| Cow position: | chr4:20279164-20279376 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 448-685 |
| Cow position: | chr4:15120072-15120298 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 448-699 |
| Cow position: | chr4:15283188-15283449 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 448-702 |
| Cow position: | chr4:52597657-52597387 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 448-704 |
| Cow position: | chr4:13406531-13406796 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 26, 247 |
| Conread position: | 448-711 |
| Cow position: | chr4:8597869-8597598 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-711 |
| Cow position: | chr4:39646514-39646764 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 68 |
| Conread position: | 448-711 |
| Cow position: | chr4:51408147-51407881 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 448-726 |
| Cow position: | chr4:9821980-9822254 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 448-726 |
| Cow position: | chr4:21162490-21162774 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 225 |
| Conread position: | 448-730 |
| Cow position: | chr4:5189182-5188897 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 119 |
| Conread position: | 448-730 |
| Cow position: | chr4:32749022-32749308 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 448-731 |
| Cow position: | chr4:3133096-3133372 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 448-732 |
| Cow position: | chr4:5623377-5623083 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 116 |
| Conread position: | 448-732 |
| Cow position: | chr4:17175992-17176266 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 448-732 |
| Cow position: | chr4:31586991-31586711 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 448-732 |
| Cow position: | chr4:58433386-58433101 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 448-732 |
| Cow position: | chr4:58833394-58833101 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 448-732 |
| Cow position: | chr4:59565359-59565650 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 141 |
| Conread position: | 449-732 |
| Cow position: | chr4:6630469-6630175 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 25, 206 |
| Conread position: | 449-732 |
| Cow position: | chr4:47510843-47511139 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 449-732 |
| Cow position: | chr4:53763296-53763010 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 154 |
| Conread position: | 451-663 |
| Cow position: | chr4:45240097-45240322 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 451-711 |
| Cow position: | chr4:9168824-9168571 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 55 |
| Conread position: | 457-732 |
| Cow position: | chr4:57652082-57652357 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 458-696 |
| Cow position: | chr4:6792268-6792516 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 16, 202 |
| Conread position: | 460-711 |
| Cow position: | chr4:59333143-59332888 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 460-732 |
| Cow position: | chr4:9649833-9650121 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 17, 197 |
| Conread position: | 481-708 |
| Cow position: | chr4:2597011-2596782 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 502-732 |
| Cow position: | chr4:45114719-45114490 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 510-731 |
| Cow position: | chr4:41975828-41975600 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 588-726 |
| Cow position: | chr4:14564945-14564808 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 592-732 |
| Cow position: | chr4:29222548-29222406 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 600-729 |
| Cow position: | chr4:29067660-29067530 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 112, 21 |
| Conread position: | 604-732 |
| Cow position: | chr4:20925995-20925867 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 616-732 |
| Cow position: | chr4:57566488-57566372 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 96, 76 |
Show alignments to all cow chromosomes.