Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 410-715 |
| Cow position: | chr5:50900721-50901040 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 431-722 |
| Cow position: | chr5:70128008-70128281 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 448-627 |
| Cow position: | chr5:37068749-37068935 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 26, 144 |
| Conread position: | 448-640 |
| Cow position: | chr5:27492335-27492540 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-671 |
| Cow position: | chr5:9234223-9233997 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 448-675 |
| Cow position: | chr5:54089896-54090128 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 448-699 |
| Cow position: | chr5:59303418-59303165 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 26, 212 |
| Conread position: | 448-703 |
| Cow position: | chr5:15089044-15089296 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 448-704 |
| Cow position: | chr5:39695507-39695772 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 246 |
| Conread position: | 448-704 |
| Cow position: | chr5:41598847-41598591 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 448-708 |
| Cow position: | chr5:15882618-15882342 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 26, 197 |
| Conread position: | 448-709 |
| Cow position: | chr5:21167269-21167006 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 139 |
| Conread position: | 448-710 |
| Cow position: | chr5:54111776-54112040 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 92 |
| Conread position: | 448-711 |
| Cow position: | chr5:364711-364465 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 448-711 |
| Cow position: | chr5:34167818-34168091 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 448-726 |
| Cow position: | chr5:51952232-51952524 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 448-732 |
| Cow position: | chr5:40270901-40271178 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 449-726 |
| Cow position: | chr5:14832754-14832470 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 43 |
| Conread position: | 449-732 |
| Cow position: | chr5:23647154-23646866 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 111 |
| Conread position: | 449-732 |
| Cow position: | chr5:51076789-51076494 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 249 |
| Conread position: | 449-732 |
| Cow position: | chr5:62579806-62579539 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 450-671 |
| Cow position: | chr5:57126874-57127102 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 202 |
| Conread position: | 450-732 |
| Cow position: | chr5:37425602-37425894 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 451-699 |
| Cow position: | chr5:27904272-27904525 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 191 |
| Conread position: | 451-711 |
| Cow position: | chr5:61030368-61030090 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 130 |
| Conread position: | 452-711 |
| Cow position: | chr5:52438008-52438275 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 454-718 |
| Cow position: | chr5:25927834-25927561 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 155 |
| Conread position: | 454-726 |
| Cow position: | chr5:48224715-48224437 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 454-732 |
| Cow position: | chr5:23234316-23234614 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 159 |
| Conread position: | 457-672 |
| Cow position: | chr5:74358738-74358509 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 185 |
| Conread position: | 457-685 |
| Cow position: | chr5:328314-328087 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 458-731 |
| Cow position: | chr5:23753353-23753072 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 19, 233 |
| Conread position: | 462-711 |
| Cow position: | chr5:34218394-34218141 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 38, 180 |
| Conread position: | 463-730 |
| Cow position: | chr5:45912413-45912150 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 476-726 |
| Cow position: | chr5:34483652-34483388 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 496-712 |
| Cow position: | chr5:37047958-37048179 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 18, 172 |
| Conread position: | 498-722 |
| Cow position: | chr5:1305318-1305096 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 500-685 |
| Cow position: | chr5:70250096-70250284 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 502-722 |
| Cow position: | chr5:19300514-19300295 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 502-732 |
| Cow position: | chr5:60968321-60968559 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 530-732 |
| Cow position: | chr5:59072967-59073176 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 564-711 |
| Cow position: | chr5:33986206-33986060 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 572-731 |
| Cow position: | chr5:21146241-21146082 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 140, 93 |
| Conread position: | 573-732 |
| Cow position: | chr5:10786248-10786088 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 121 |
Show alignments to all cow chromosomes.