Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 402-725 |
| Cow position: | chr6:31526993-31526658 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 254 |
| Conread position: | 447-640 |
| Cow position: | chr6:6721971-6722176 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 448-658 |
| Cow position: | chr6:6701394-6701186 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 448-684 |
| Cow position: | chr6:47616741-47616494 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 179 |
| Conread position: | 448-696 |
| Cow position: | chr6:34549283-34549531 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 127, 25 |
| Conread position: | 448-696 |
| Cow position: | chr6:40299987-40299720 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 224 |
| Conread position: | 448-699 |
| Cow position: | chr6:41152518-41152776 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 26, 147 |
| Conread position: | 448-708 |
| Cow position: | chr6:60931026-60930757 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 448-709 |
| Cow position: | chr6:6188125-6188360 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 448-711 |
| Cow position: | chr6:30315188-30314908 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 257 |
| Conread position: | 448-711 |
| Cow position: | chr6:51071580-51071850 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 448-712 |
| Cow position: | chr6:3017319-3017593 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-712 |
| Cow position: | chr6:41557345-41557611 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 448-722 |
| Cow position: | chr6:3374701-3374416 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 211 |
| Conread position: | 448-726 |
| Cow position: | chr6:11160137-11159847 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 448-726 |
| Cow position: | chr6:39917043-39917321 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 448-726 |
| Cow position: | chr6:45617568-45617274 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 448-727 |
| Cow position: | chr6:11383107-11382810 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 222 |
| Conread position: | 448-727 |
| Cow position: | chr6:38899886-38899612 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 448-729 |
| Cow position: | chr6:50822106-50822391 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 29, 154 |
| Conread position: | 448-730 |
| Cow position: | chr6:13592582-13592872 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 25, 78 |
| Conread position: | 448-730 |
| Cow position: | chr6:44377136-44377429 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 180 |
| Conread position: | 448-732 |
| Cow position: | chr6:16517990-16517721 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 449-711 |
| Cow position: | chr6:24917838-24917579 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 449-721 |
| Cow position: | chr6:62327014-62327290 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 25, 168 |
| Conread position: | 449-722 |
| Cow position: | chr6:29077598-29077888 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 269 |
| Conread position: | 449-728 |
| Cow position: | chr6:55936107-55935816 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 449-732 |
| Cow position: | chr6:4666916-4666630 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 450-726 |
| Cow position: | chr6:27710529-27710806 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 24, 139 |
| Conread position: | 451-685 |
| Cow position: | chr6:20172093-20172341 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 245 |
| Conread position: | 451-711 |
| Cow position: | chr6:9469520-9469783 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 145 |
| Conread position: | 451-732 |
| Cow position: | chr6:23891425-23891722 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 453-721 |
| Cow position: | chr6:49734278-49734542 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 454-698 |
| Cow position: | chr6:62754607-62754353 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 457-726 |
| Cow position: | chr6:57686035-57686309 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 458-675 |
| Cow position: | chr6:58594223-58593997 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 460-699 |
| Cow position: | chr6:12519393-12519628 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 460-706 |
| Cow position: | chr6:57119059-57118805 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 476-732 |
| Cow position: | chr6:32428127-32428398 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 25, 204 |
| Conread position: | 477-706 |
| Cow position: | chr6:38018165-38018398 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 481-708 |
| Cow position: | chr6:51486320-51486554 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 500-725 |
| Cow position: | chr6:20332559-20332326 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 500-731 |
| Cow position: | chr6:54032163-54032391 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 147 |
| Conread position: | 502-706 |
| Cow position: | chr6:50501201-50501412 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 147 |
| Conread position: | 514-709 |
| Cow position: | chr6:29084265-29084068 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 163 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 533-732 |
| Cow position: | chr6:31688223-31688020 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 39 |
Show alignments to all cow chromosomes.