Cow genome map
| Conread name: | Ss1.1-Mixc-0038,d19.5 |
| Conread position: | 410-711 |
| Cow position: | chrX:35925781-35926086 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 433-704 |
| Cow position: | chrX:2786711-2786435 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 444-712 |
| Cow position: | chrX:11981988-11982268 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 444-732 |
| Cow position: | chrX:24201037-24201333 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 108 |
| Conread position: | 447-642 |
| Cow position: | chrX:9227124-9226914 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 448-664 |
| Cow position: | chrX:8517732-8517957 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 102 |
| Conread position: | 448-695 |
| Cow position: | chrX:29601974-29601715 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 254 |
| Conread position: | 448-696 |
| Cow position: | chrX:25281609-25281369 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 78 |
| Conread position: | 448-698 |
| Cow position: | chrX:25338038-25338303 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 448-699 |
| Cow position: | chrX:24132293-24132034 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 448-709 |
| Cow position: | chrX:13245449-13245724 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 264 |
| Conread position: | 448-710 |
| Cow position: | chrX:30729545-30729284 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 448-712 |
| Cow position: | chrX:2147193-2147471 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 26, 149 |
| Conread position: | 448-731 |
| Cow position: | chrX:2186117-2186412 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 448-731 |
| Cow position: | chrX:8558604-8558312 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 141 |
| Conread position: | 448-731 |
| Cow position: | chrX:21816116-21816416 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 251 |
| Conread position: | 448-732 |
| Cow position: | chrX:12826606-12826903 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 209 |
| Conread position: | 448-732 |
| Cow position: | chrX:23254355-23254047 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 448-732 |
| Cow position: | chrX:37956223-37956504 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 449-622 |
| Cow position: | chrX:29055975-29056158 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 449-664 |
| Cow position: | chrX:23666978-23667209 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 172 |
| Conread position: | 449-679 |
| Cow position: | chrX:9910898-9910673 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 70, 24 |
| Conread position: | 449-683 |
| Cow position: | chrX:630450-630208 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 152 |
| Conread position: | 449-684 |
| Cow position: | chrX:7497099-7497345 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 28, 170 |
| Conread position: | 449-684 |
| Cow position: | chrX:8917709-8917945 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 56 |
| Conread position: | 449-708 |
| Cow position: | chrX:20791962-20791689 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 449-711 |
| Cow position: | chrX:11674921-11675195 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 449-732 |
| Cow position: | chrX:4631802-4631519 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 452-731 |
| Cow position: | chrX:3147060-3147352 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 22, 240 |
| Conread position: | 454-712 |
| Cow position: | chrX:13058442-13058700 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 455-732 |
| Cow position: | chrX:24827193-24827459 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 457-613 |
| Cow position: | chrX:280992-281156 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 457-685 |
| Cow position: | chrX:2764731-2764965 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 201 |
| Conread position: | 462-711 |
| Cow position: | chrX:12689207-12688955 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 12, 59 |
| Conread position: | 529-732 |
| Cow position: | chrX:16816614-16816823 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 552-695 |
| Cow position: | chrX:42226623-42226766 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 98 |
| Conread position: | 562-731 |
| Cow position: | chrX:10311727-10311898 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 120 |
| Conread position: | 573-711 |
| Cow position: | chrX:24952564-24952428 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 121, 96 |
| Conread position: | 574-726 |
| Cow position: | chrX:24285949-24286102 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 129 |
| Conread position: | 580-732 |
| Cow position: | chrX:20504716-20504869 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 137, 11 |
| Conread position: | 582-726 |
| Cow position: | chrX:41660179-41660324 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 128, 111 |
| Conread position: | 584-732 |
| Cow position: | chrX:4597722-4597579 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 595-712 |
| Cow position: | chrX:19018241-19018128 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 602-709 |
| Cow position: | chrX:18814193-18814300 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.