Cow genome map
| Conread name: | Ss1.1-Mixc-0041,o07.5 |
| Conread position: | 74-635 |
| Cow position: | chr17:22473283-22473858 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 91 |
| Conread position: | 87-621 |
| Cow position: | chr17:22552974-22552426 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 119 |
| Conread position: | 87-642 |
| Cow position: | chr17:22552554-22551986 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 119 |
| Conread position: | 88-625 |
| Cow position: | chr17:22552721-22552171 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 117 |
| Conread position: | 91-633 |
| Cow position: | chr17:22590304-22589748 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 115 |
| Conread position: | 98-469 |
| Cow position: | chr17:22498834-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 303 |
| Conread position: | 140-592 |
| Cow position: | chr17:22452189-22451734 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 140-634 |
| Cow position: | chr17:22452357-22451858 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 140-636 |
| Cow position: | chr17:22552240-22551739 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 145-628 |
| Cow position: | chr17:22499281-22498796 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 157-635 |
| Cow position: | chr17:22553060-22552580 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 158-633 |
| Cow position: | chr17:22552555-22552078 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 0 |
| Conread position: | 164-633 |
| Cow position: | chr17:22552045-22551574 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 164-633 |
| Cow position: | chr17:22590135-22589664 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 336 |
| Conread position: | 164-636 |
| Cow position: | chr17:22499092-22498618 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 168-551 |
| Cow position: | chr17:22498836-22498462 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 169-321 |
| Cow position: | chr17:22473810-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 182-638 |
| Cow position: | chr17:22553118-22552661 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 192-623 |
| Cow position: | chr17:44467855-44468286 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 192-631 |
| Cow position: | chr17:22452050-22451609 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 0 |
| Conread position: | 192-636 |
| Cow position: | chr17:22452218-22451772 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 124 |
| Conread position: | 192-637 |
| Cow position: | chr17:22498980-22498533 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 0 |
| Conread position: | 192-638 |
| Cow position: | chr17:22473497-22473946 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 195-552 |
| Cow position: | chr17:22451963-22451606 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 175, 180 |
| Conread position: | 195-628 |
| Cow position: | chr17:22452383-22451950 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 118 |
| Conread position: | 195-635 |
| Cow position: | chr17:22499145-22498703 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 381 |
| Conread position: | 195-636 |
| Cow position: | chr17:22499313-22498870 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 303 |
| Conread position: | 196-561 |
| Cow position: | chr17:22551845-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-620 |
| Cow position: | chr17:22552097-22551673 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-622 |
| Cow position: | chr17:22589599-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 196-631 |
| Cow position: | chr17:22589767-22589331 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 394 |
| Conread position: | 196-633 |
| Cow position: | chr17:22551929-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 196-633 |
| Cow position: | chr17:22552265-22551826 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 196-633 |
| Cow position: | chr17:22552349-22551910 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 0 |
| Conread position: | 196-633 |
| Cow position: | chr17:22552769-22552330 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 402 |
| Conread position: | 196-633 |
| Cow position: | chr17:22589683-22589244 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 120 |
| Conread position: | 196-633 |
| Cow position: | chr17:22590019-22589580 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 196-635 |
| Cow position: | chr17:22589851-22589410 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 196-635 |
| Cow position: | chr17:22589935-22589494 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 0 |
| Conread position: | 199-633 |
| Cow position: | chr17:22499393-22498957 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 300 |
| Conread position: | 208-626 |
| Cow position: | chr17:22473261-22473679 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 218-633 |
| Cow position: | chr17:22553167-22552750 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 0 |
| Conread position: | 258-638 |
| Cow position: | chr17:22452405-22452022 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 310 |
| Conread position: | 278-613 |
| Cow position: | chr17:22499398-22499063 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 337-633 |
| Cow position: | chr17:22452409-22452111 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 388-584 |
| Cow position: | chr17:41441100-41440904 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.