Cow genome map
| Conread name: | Ss1.1-Mixc-0041,o07.5 |
| Conread position: | 44-613 |
| Cow position: | chr19:14959397-14958831 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 63-636 |
| Cow position: | chr19:14939927-14940514 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 74-613 |
| Cow position: | chr19:14960274-14959726 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 74-634 |
| Cow position: | chr19:14960357-14959787 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 120 |
| Conread position: | 87-631 |
| Cow position: | chr19:43570335-43569787 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 94 |
| Conread position: | 87-633 |
| Cow position: | chr19:14940203-14940763 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 87-636 |
| Cow position: | chr19:14940035-14940598 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 107 |
| Conread position: | 91-636 |
| Cow position: | chr19:14940375-14940934 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 137-638 |
| Cow position: | chr19:23614462-23614968 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 140-453 |
| Cow position: | chr19:14959133-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 140-621 |
| Cow position: | chr19:14940601-14941085 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 140-634 |
| Cow position: | chr19:23614297-23614796 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 140-659 |
| Cow position: | chr19:43570199-43569678 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 144-635 |
| Cow position: | chr19:23613881-23614377 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 145-649 |
| Cow position: | chr19:20635519-20635011 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 452 |
| Conread position: | 158-634 |
| Cow position: | chr19:14960429-14959953 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 158-636 |
| Cow position: | chr19:23649768-23650248 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 158-636 |
| Cow position: | chr19:23649852-23650332 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 164-613 |
| Cow position: | chr19:23650026-23650475 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 164-636 |
| Cow position: | chr19:23613736-23614210 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 171 |
| Conread position: | 164-636 |
| Cow position: | chr19:23614072-23614546 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 165-588 |
| Cow position: | chr19:23614409-23614830 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 166-446 |
| Cow position: | chr19:23650196-23650476 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 167-540 |
| Cow position: | chr19:23650113-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 167-557 |
| Cow position: | chr19:23614747-23615135 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 167-629 |
| Cow position: | chr19:20678342-20678803 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 242 |
| Conread position: | 167-636 |
| Cow position: | chr19:20677838-20678309 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 326 |
| Conread position: | 168-635 |
| Cow position: | chr19:20635577-20635108 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 148 |
| Conread position: | 168-636 |
| Cow position: | chr19:23597085-23597555 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 168-638 |
| Cow position: | chr19:20677671-20678143 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 324 |
| Conread position: | 169-560 |
| Cow position: | chr19:23597338-23597730 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 169-636 |
| Cow position: | chr19:23613489-23613958 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 331 |
| Conread position: | 175-576 |
| Cow position: | chr19:20677762-20678163 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 233 |
| Conread position: | 175-613 |
| Cow position: | chr19:23597260-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 404 |
| Conread position: | 177-636 |
| Cow position: | chr19:23614253-23614714 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 5 |
| Conread position: | 186-629 |
| Cow position: | chr19:23649712-23650155 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 192-623 |
| Cow position: | chr19:23649970-23650401 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 192-627 |
| Cow position: | chr19:23614016-23614453 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 0 |
| Conread position: | 192-635 |
| Cow position: | chr19:14960061-14959632 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 121 |
| Conread position: | 192-636 |
| Cow position: | chr19:14959573-14959136 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 267 |
| Conread position: | 192-636 |
| Cow position: | chr19:20677527-20677973 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 0 |
| Conread position: | 193-634 |
| Cow position: | chr19:20678116-20678559 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 193-635 |
| Cow position: | chr19:14915959-14916399 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 193-636 |
| Cow position: | chr19:20678284-20678726 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 195-575 |
| Cow position: | chr19:20635382-20635002 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 195-603 |
| Cow position: | chr19:14948384-14947978 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 195-635 |
| Cow position: | chr19:23614607-23615049 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 0 |
| Conread position: | 195-636 |
| Cow position: | chr19:14940407-14940850 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 0 |
| Conread position: | 195-636 |
| Cow position: | chr19:20677362-20677805 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 138, 122 |
| Conread position: | 195-636 |
| Cow position: | chr19:23613683-23614126 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 224 |
| Conread position: | 195-636 |
| Cow position: | chr19:23613851-23614294 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 304 |
| Conread position: | 195-636 |
| Cow position: | chr19:43570383-43569950 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 105 |
| Conread position: | 195-638 |
| Cow position: | chr19:20635634-20635189 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 196-537 |
| Cow position: | chr19:14959158-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 196-623 |
| Cow position: | chr19:23649302-23649729 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 394 |
| Conread position: | 196-625 |
| Cow position: | chr19:23597197-23597627 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 0 |
| Conread position: | 196-628 |
| Cow position: | chr19:14960475-14960045 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 196-633 |
| Cow position: | chr19:23596948-23597384 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 196-633 |
| Cow position: | chr19:23649638-23650077 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 310 |
| Conread position: | 196-635 |
| Cow position: | chr19:23649554-23649995 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 196-636 |
| Cow position: | chr19:20678035-20678477 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 138 |
| Conread position: | 196-636 |
| Cow position: | chr19:23614188-23614630 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 0 |
| Conread position: | 196-636 |
| Cow position: | chr19:23649470-23649912 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 196-638 |
| Cow position: | chr19:14940576-14941020 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 398 |
| Conread position: | 196-652 |
| Cow position: | chr19:23614692-23615147 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 220 |
| Conread position: | 197-636 |
| Cow position: | chr19:20635715-20635275 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 418, 17 |
| Conread position: | 198-633 |
| Cow position: | chr19:14959650-14959223 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 198-636 |
| Cow position: | chr19:23613350-23613790 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 418, 0 |
| Conread position: | 198-636 |
| Cow position: | chr19:23613434-23613874 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 113 |
| Conread position: | 198-636 |
| Cow position: | chr19:23649388-23649828 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 0 |
| Conread position: | 199-635 |
| Cow position: | chr19:23613603-23614041 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 298 |
| Conread position: | 200-611 |
| Cow position: | chr19:14948462-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 59 |
| Conread position: | 200-633 |
| Cow position: | chr19:23596868-23597300 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 165 |
| Conread position: | 209-636 |
| Cow position: | chr19:20678216-20678645 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 369 |
| Conread position: | 212-634 |
| Cow position: | chr19:23597045-23597469 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 0 |
| Conread position: | 217-636 |
| Cow position: | chr19:20677303-20677721 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 150, 56 |
| Conread position: | 220-633 |
| Cow position: | chr19:20677639-20678054 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 356 |
| Conread position: | 262-638 |
| Cow position: | chr19:14948484-14948107 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 81 |
| Conread position: | 265-636 |
| Cow position: | chr19:23596849-23597219 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 355, 187 |
| Conread position: | 267-625 |
| Cow position: | chr19:23649289-23649648 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 280-638 |
| Cow position: | chr19:14960475-14960117 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 322 |
| Conread position: | 293-633 |
| Cow position: | chr19:43570452-43570121 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 300-539 |
| Cow position: | chr19:23668525-23668757 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 345-634 |
| Cow position: | chr19:23649283-23649574 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 62, 54 |
| Conread position: | 362-634 |
| Cow position: | chr19:14960477-14960203 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 36, 42 |
Show alignments to all cow chromosomes.