Cow genome map

Conread name: Ss1.1-Mixc-0041,o07.5

Conread position: 135-572
Cow position: chr2:86465452-86465892 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 285
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 62

Conread position: 139-635
Cow position: chr2:78755524-78756023 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 57

Conread position: 140-647
Cow position: chr2:78755609-78756120 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 145-636
Cow position: chr2:82799639-82800134 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 39

Conread position: 148-599
Cow position: chr2:5875149-5874694 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 284
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 9, 35

Conread position: 167-636
Cow position: chr2:82799579-82800050 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 458, 0

Conread position: 168-647
Cow position: chr2:78754067-78754544 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 301
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 32

Conread position: 175-627
Cow position: chr2:78755899-78756349 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 8

Conread position: 176-633
Cow position: chr2:86465076-86465535 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 286
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 8, 13

Conread position: 177-575
Cow position: chr2:86465331-86465727 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 259
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 146, 6

Conread position: 192-532
Cow position: chr2:82800108-82800448 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 46

Conread position: 192-636
Cow position: chr2:82799772-82800218 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 46

Conread position: 195-634
Cow position: chr2:86465767-86466206 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 278
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 166, 179

Conread position: 195-638
Cow position: chr2:86465179-86465624 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 278
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 70, 74

Conread position: 196-491
Cow position: chr2:48689376-48689081 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 186
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 200, 221

Conread position: 196-613
Cow position: chr2:5874932-5874515 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 263
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 44

Conread position: 196-623
Cow position: chr2:78755417-78755841 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 96

Conread position: 196-628
Cow position: chr2:5874680-5874248 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 265
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 36, 44

Conread position: 196-631
Cow position: chr2:78754176-78754611 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 285
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 174, 182

Conread position: 196-633
Cow position: chr2:78754510-78754933 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 285
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 419, 176

Conread position: 196-633
Cow position: chr2:78754914-78755352 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 419, 0

Conread position: 196-634
Cow position: chr2:82799524-82799964 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 207

Conread position: 196-634
Cow position: chr2:82799860-82800300 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 201

Conread position: 196-635
Cow position: chr2:78754678-78755103 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 10

Conread position: 196-635
Cow position: chr2:78754830-78755271 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 0

Conread position: 196-636
Cow position: chr2:78755082-78755522 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 52

Conread position: 196-638
Cow position: chr2:82799944-82800388 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 357

Conread position: 198-572
Cow position: chr2:86465266-86465640 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 8

Conread position: 198-629
Cow position: chr2:5874846-5874414 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 266
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 200, 206

Conread position: 199-627
Cow position: chr2:86465603-86466033 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 260
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 123, 137

Conread position: 200-628
Cow position: chr2:78754262-78754691 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 176

Conread position: 201-574
Cow position: chr2:48689540-48689166 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 238
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 12, 139

Conread position: 201-590
Cow position: chr2:78754431-78754816 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 53

Conread position: 201-613
Cow position: chr2:82800031-82800445 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 271

Conread position: 202-634
Cow position: chr2:78755506-78755938 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 155

Conread position: 208-580
Cow position: chr2:5875172-5874800 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 232
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 220, 193

Conread position: 214-636
Cow position: chr2:82799458-82799882 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 0

Conread position: 220-611
Cow position: chr2:5874740-5874349 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 243
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 24, 28

Conread position: 220-623
Cow position: chr2:5874992-5874589 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 249
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 110, 115

Conread position: 233-620
Cow position: chr2:86465049-86465436 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 236
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 55, 61

Conread position: 253-617
Cow position: chr2:5874539-5874171 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 234
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 77, 85

Conread position: 262-636
Cow position: chr2:78754812-78755188 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 322

Conread position: 265-623
Cow position: chr2:82799424-82799783 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 307

Conread position: 282-613
Cow position: chr2:48689541-48689211 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 215
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 126, 151

Show alignments to all cow chromosomes.